2010
DOI: 10.1186/1471-2164-11-68
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The European sea bass Dicentrarchus labrax genome puzzle: comparative BAC-mapping and low coverage shotgun sequencing

Abstract: BackgroundFood supply from the ocean is constrained by the shortage of domesticated and selected fish. Development of genomic models of economically important fishes should assist with the removal of this bottleneck. European sea bass Dicentrarchus labrax L. (Moronidae, Perciformes, Teleostei) is one of the most important fishes in European marine aquaculture; growing genomic resources put it on its way to serve as an economic model.ResultsEnd sequencing of a sea bass genomic BAC-library enabled the comparativ… Show more

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Cited by 58 publications
(44 citation statements)
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“…Lack of markers at physiologically significant candidate genes is certainly one explanation (see Introduction). In the present study, the exploitation of genomic scaffolds (Kuhl et al 2010a) and traditional sequencing techniques allowed the development of such markers, and the investigation of their variation both in natural populations and among cultured individuals submitted to a salinity challenge that induced higher mortality rates in freshwater-challenged fishes. 292 N. Quéré et al: Aquat.…”
Section: Discussionmentioning
confidence: 99%
See 1 more Smart Citation
“…Lack of markers at physiologically significant candidate genes is certainly one explanation (see Introduction). In the present study, the exploitation of genomic scaffolds (Kuhl et al 2010a) and traditional sequencing techniques allowed the development of such markers, and the investigation of their variation both in natural populations and among cultured individuals submitted to a salinity challenge that induced higher mortality rates in freshwater-challenged fishes. 292 N. Quéré et al: Aquat.…”
Section: Discussionmentioning
confidence: 99%
“…ncbi.nlm.nih.gov/) were used to query the genomic scaffolds from the sea bass whole genome sequencing project in progress (Kuhl et al 2010a). The resulting assemblies were completed for all three genes by Sanger sequencing on ABI Prism 3130xl Genetic Analyser, using primers reported in supplementary material (Annexe 1).…”
Section: Genomic Sequence Completionmentioning
confidence: 99%
“…aquaculture, oyster-farming) have also driven the development of genome sequencing programs of species of economic interest. Indeed, several species have ongoing genome projects such as the European sea bass (Kuhl et al, 2010), the Atlantic salmon (Ng et al, 2005); the rainbow trout (Palti et al, 2009), the Atlantic cod (Star et al, 2011), eel (Henkel et al, 2012), and the pacific oyster .…”
Section: Omics and Vertebrate Non-model Speciesmentioning
confidence: 99%
“…Two generations of genetic maps, developed using microsatellites and AFLPs, were developed (Chistiakov et al, 2005. A radiation hybrid map was obtained by Guyon et al (2010) and BAC sequencing data and preliminary single nucleotide polymorphism discovery were reported (Kuhl et al, 2010(Kuhl et al, , 2011a(Kuhl et al, , 2011b. Only recently, the publication of the first version of the assembled D. labrax whole genome has opened new opportunities to evaluate and monitor genetic stock variability (Tine et al, 2014).…”
Section: Introductionmentioning
confidence: 99%