The evolution and diurnal expression patterns of photosynthetic pathway genes of the invasive alien weed, Mikania micrantha

WANG, Kang-kang; Jin, Mengjiao; LI, Jing-jing; REN, Ye-song; LI, Zai-yuan; Ren, Xinghai; Huang, Cong; Wan, Fanghao; QIAN, Wan-qiang; Liu, Bo

doi:10.1016/j.jia.2023.04.011

Cited by 3 publications

(3 citation statements)

References 69 publications

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“…Expanding our predator-prey model to include a complex food web would allow us to examine how food web complexity affects responses when habitat destruction and invasion occur together. Second, since invasive species must rapidly adapt to new environmental conditions during invasion (Hänfling & Kollmann, 2002;Wang et al, 2023), investigating the evolutionary responses of both invasive and native species (Evans et al, 2022) could elucidate the impact of coevolution on invasion and persistence. Last, while the core conclusion of this study namely that habitat destruction may compensate threats to native predator-prey systems from global predator invasion, receives some mechanistic support (Figure 7) and is corroborated by other studies (Bozzuto et al, 2021), this conclusion holds true only under very specific conditions, as analyzed in the "Results" section and the second and third paragraphs of this "Discussion" section.…”

Section: Robustness Of Resultsmentioning

confidence: 99%

Counteractive effects of predator invasion and habitat destruction on predator–prey systems

Zhang,

Wang,

Yang

et al. 2024

Ecology and Evolution

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Alien species invasion and habitat destruction are among the primary threats to native animal communities, particularly for native predator–prey systems. However, when predator invasion and habitat destruction co‐occur, it remains unclear whether their respective threats to native systems compensate each other or accumulate, as well as how these effects respond to the different characteristics of predator invasion and habitat destruction. In this study, we developed a spatially explicit simulation model with one prey species and one predator species and exposed it to invasive predators and habitat destruction with different properties. The results revealed the following insights: (1) Habitat destruction can compensate threats to native predator–prey systems from global predator invasion only when native predators possess predation capability similar to those of the invaders. In other scenarios, cumulative effects arise from predator invasion and habitat destruction. (2) Low levels of habitat destruction occurring at a faster rate, in conjunction with a substantial number of global invasive predators being present, can better compensate their respective threats to native predator–prey systems than the other scenarios. These findings provide valuable insights into situations where habitat destruction and alien species invasion coincide. They raise the question of whether we can leverage the interaction between them to reduce threats to biodiversity.

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Section: Robustness Of Resultsmentioning

confidence: 99%

Counteractive effects of predator invasion and habitat destruction on predator–prey systems

Zhang,

Wang,

Yang

et al. 2024

Ecology and Evolution

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“…The Ribo-Zero rRNA Removal Kit (Epicenter, Madison, WI, USA) was utilized to extract rRNA from the samples using 1. Beverly, USA) were used to purify the library fragments in order to choose pieces that were ideally 150-200 bp length [49] . Next, selector-ligated cDNA was treated with 3 μl USER Enzyme (NEB, USA) at 37°C for 15 minutes before to PCR.…”

Section: Lncrna and Mrna Library Constructionmentioning

confidence: 99%

“…primer were used to carry out PCR. Finally, the AMPure XP system [49] was used to purify the PCR products, and qPCR and the Agilent Bioanalyzer 2100 [48] were used to evaluate the library quality.…”

Section: Lncrna and Mrna Library Constructionmentioning

confidence: 99%

Profiling the lncRNA-miRNA-mRNA interaction network in the cold-resistant exercise period of grape (Vitis amurensis Rupr.)

Ma,

et al. 2024

Preprint

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Background Grape is a plant that is sensitive to low temperature and is vulnerable to low temperature damage. However, little is known about the roles of lncRNAs, miRNAs and mRNAs regulate the hypothermia response mechanism in Vitis amurensis Rupr. Methods In this study, the expression and regulatory network of low-temperature response genes were studied in phloem of grape under different low temperature stress. Results Here, we performed analyses related to RNA-seq and miRNA-seq on grape phloem tissues from five periods of cold resistance campaigns. Three RNA (lncRNAs, miRNAs and mRNAs) obtained by KEGG and GO analyses were used to identify starch and sucrose metabolic pathways associated with cold resistance, and specific changes in BP, CC, and MF were identified in four comparisons. The differentially expressed genes (DEGs) of these pathways were analysed by using Venn diagrams, thermograms and pathway maps respectively, to obtain their specific gene expression during cold exercise. The six DEGs were finally selected, and they were used for qRT-PCR to verify the RNA-seq data. In addition, we found the regulatory networks of miRNAs and lncRNAs correspond to the six DEGs. This study will contribute to further experimental studies to elucidate the cold resistance mechanism of Vitis amurensis Rupr. Conclusions The low temperature response genes of grape are mainly enriched in the metabolic pathways of starch and sucrose, and regulated by miRNA and lncrna, which will provide basic information for further understanding of the cold resistance mechanism of grape in the future.

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Profiling the lncRNA–miRNA–mRNA interaction network in the cold-resistant exercise period of grape (Vitis amurensis Rupr.)

Ma,

et al. 2024

Chem. Biol. Technol. Agric.

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Background Grape is a plant that is sensitive to low temperature and vulnerable to low-temperature damage. However, little is known about the roles of lncRNAs, miRNAs and mRNAs in regulating the hypothermia response mechanism in Vitis amurensis Rupr. Methods In this study, the expression and regulatory network of low-temperature response genes were studied in the phloem of grape under different low-temperature stress. Results Here, we performed analyses related to RNA-seq and miRNA-seq on grape phloem tissues from five periods of cold resistance campaigns. Three RNAs (lncRNAs, miRNAs and mRNAs) obtained by KEGG and GO analyses were used to identify starch and sucrose metabolism associated with cold resistance, and specific changes in BP, CC, and MF were identified in four comparisons. Venn diagrams, thermograms and pathway maps were used to analyze the differentially expressed genes (DEGs), and their specific gene expression during the cold exercise were obtained. The six DEGs finally selected were used for qRT-PCR to verify the RNA-seq data. In addition, we found that the regulatory networks of miRNAs and lncRNAs correspond to the six DEGs. This study will contribute to further experimental studies to elucidate the cold resistance mechanism of Vitis amurensis Rupr. Conclusions The low-temperature response genes of grape are mainly enriched in the starch and sucrose metabolism, and they are regulated by miRNAs and lncRNAs. The conclusions will provide basic information for further understanding of the cold resistance mechanism of grape in the future. Graphical Abstract

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The evolution and diurnal expression patterns of photosynthetic pathway genes of the invasive alien weed, Mikania micrantha

Cited by 3 publications

References 69 publications

Counteractive effects of predator invasion and habitat destruction on predator–prey systems

Counteractive effects of predator invasion and habitat destruction on predator–prey systems

Profiling the lncRNA-miRNA-mRNA interaction network in the cold-resistant exercise period of grape (Vitis amurensis Rupr.)

Profiling the lncRNA–miRNA–mRNA interaction network in the cold-resistant exercise period of grape (Vitis amurensis Rupr.)

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