. Endotoxin induces differential regulation of mTOR-dependent signaling in skeletal muscle and liver of neonatal pigs. Am J Physiol Endocrinol Metab 285: E637-E644, 2003. First published May 28, 2003 10.1152/ ajpendo.00340.2002In the present study, differential responses of regulatory proteins involved in translation initiation in skeletal muscle and liver during sepsis were studied in neonatal pigs treated with lipopolysaccharide (LPS). LPS did not alter eukaryotic initiation factor (eIF)2B activity in either tissue. In contrast, binding of eIF4G to eIF4E to form the active mRNA-binding complex was repressed in muscle and enhanced in liver. Phosphorylation of eIF4E-binding protein, 4E-BP1, and ribosomal protein S6 kinase, S6K1, was reduced in muscle during sepsis but increased in liver. Finally, changes in 4E-BP1 and S6K1 phosphorylation were associated with altered phosphorylation of the protein kinase mammalian target of rapamycin (mTOR). Overall, the results suggest that translation initiation in both skeletal muscle and liver is altered during neonatal sepsis by modulation of the mRNA-binding step through changes in mTOR activation. Moreover, the LPS-induced changes in factors that regulate translation initiation are more profound than previously reported changes in global rates of protein synthesis in the neonate. This finding suggests that the initiator methionyl-tRNA-rather than the mRNA-binding step in translation initiation may play a more critical role in maintaining protein synthesis rates in the neonate during sepsis. eukaryotic initiation factor 2B; eukaryotic initiation factor 4G; eukaryotic initiation factor 4E; lipopolysaccharide PREVIOUS STUDIES (48, 49) have shown that, in adult rodents, the function of three proteins that play important regulatory roles in translation initiation, i.e., eukaryotic initiation factors eIF2B and eIF4F and the ribosomal protein S6 kinase (S6K1), is downregulated in skeletal muscle of septic rats. eIF2B is a guanine nucleotide exchange factor whose substrate, eIF2, mediates the binding of initiator methionyl-tRNA (mettRNA i ) to the 40S ribosomal subunit (reviewed in Ref. 16). Thus eIF2B modulates the first step in translation initiation, and changes in its activity result in corresponding alterations in global rates of protein synthesis. Binding of mRNA to the 40S ribosomal subunit is mediated by a heterotrimeric complex referred to as eIF4F. The heterotrimeric complex referred to as eIF4F mediates the binding of mRNA to the 40S ribosomal subunit. The three proteins that comprise the eIF4F complex are eIF4A, an RNA helicase, eIF4E, the protein that binds to the m 7 GTP cap structure at the 5Ј-end of the mRNA, and eIF4G, a scaffolding protein that, in addition to eIF4A and eIF4E, also binds to the eIF3 ⅐ 40S ribosomal subunit complex. Thus mRNA binds to the 40S ribosomal subunit through the association of eIF4E with eIF4G.