Recently, a polymorphism in the complement regulator factor H (FH) gene has been associated with age-related macular degeneration. When histidine instead of tyrosine is present at position 384 in the seventh complement control protein (CCP) domain of FH, the risk for age-related macular degeneration is increased. It was recently shown that these allotypic variants of FH, in the context of a recombinant construct corresponding to CCPs 6 -8, recognize polyanionic structures differently, which may lead to altered regulation of the alternative pathway of complement. We show now that His-384, corresponding to the risk allele, binds C-reactive protein (CRP) poorly compared with the Tyr-384 form. We also found that C1q and phosphorylcholine do not compete with FH for binding to C-reactive protein. The interaction with extracellular matrix protein fibromodulin, which we now show to be mediated, at least in part, by CCP6 -8 of FH, occurs via the polypeptide of fibromodulin and not through its glycosaminoglycan modifications. The Tyr-384 variant of FH bound fibromodulin better than the His-384 form. Furthermore, we find that CCP6 -8 is able to interact with DNA and necrotic cells, but in contrast the His-384 allotype binds these ligands more strongly than the Tyr-384 variant. The variations in binding affinity of the two alleles indicate that complement activation and local inflammation in response to different targets will differ between His/His and Tyr/Tyr homozygotes.In the western world, age-related macular degeneration (AMD) 4 is the leading cause of natural blindness in the elderly (1), affecting 50 million individuals worldwide. As the mean age of the population increases it is expected that the incidence will rise even further (2). Epidemiology reveals a complex etiology with not only age but also sex, diet, and ethnic background as underlying factors for AMD predisposal. As with every multifactorial disease there are certainly also genetic predispositions. For example, C-reactive protein (CRP) levels appear to be higher in AMD patients (3), and recently attention has been drawn to a polymorphism in the factor H (FH) gene present in Caucasians (4). FH is the major soluble inhibitor of the alternative pathway of the complement system. Alternative pathway activation results from a failure to appropriately regulate the constant low level spontaneous turnover of the abundant complement component C3 to C3(H 2 O). Complement non-activating cells and other host surfaces are protected from alternative pathway complement attack through binding of FH, which is believed to have a strong affinity for polyanionic structures such as glycosaminoglycans as well as glycoproteins containing sialic acid residues (5-7). FH is therefore able to discriminate between self and non-self surfaces. FH inhibits the alternative pathway by binding C3b and reducing the formation and activity of the alternative pathway C3-convertase (C3bBb). It also accelerates the decay of this convertase and works as a cofactor for the serine proteinase fact...