The first complete chloroplast genome of <i>Coptis chinensis</i> var. <i>brevisepala</i>, with implication for the phylogeny of Ranunculaceae

Mamut, Reyim; Yisilam, Gulbar; Zhang, Hongwei; Hina, Faiza; Yang, Zhaoping

doi:10.1080/23802359.2018.1501308

Cited by 2 publications

(3 citation statements)

References 7 publications

Supporting

Mentioning

Contrasting

Order By: Relevance

“…MP analysis was carried out in PAUP Ã 4.0b10 (Swofford 2003), with 2000 replicates of random addition and 1000 bootstrap replicates. The phylogenetic framework was consistent with the previous phylogenetic studies on Ranunculaceae (Cossard et al 2016;Liu et al 2018;Mamut et al 2018;Zhang et al 2018;Zhai et al 2019). Subfamily Coptidoideae diverged early from the family.…”

supporting

confidence: 87%

See 1 more Smart Citation

The first complete chloroplast genome sequence of a medicinal goldthread species, Coptis omeiensis (Ranunculaceae)

Yao

Lyu

Zhao

et al. 2019

Mitochondrial DNA Part B

View full text Add to dashboard Cite

Coptis omeiensis, as an important Chinese medicinal plant, has been endangered because of overharvesting. To better understand and protect this species, we report the first complete chloroplast genome sequence of C. omeiensis. The chloroplast genome was found to be 154,684 bp in length, and GC content was 38.2%, with large and small single copy regions (LSC with 85,099 bp and SSC with 17,239 bp in length) separated by two Inverted repeat regions (IRs with 26,173 bp). Meanwhile, the sequence contained 113 genes, including 79 protein-coding, 30 tRNA, and 4 rRNA genes. The phylogeny of Ranunculaceae based on the complete cp genomes of 27 related taxa was also presented in this study.

show abstract

supporting

confidence: 87%

“…novogene.com, China). Chloroplast reads were extracted using published references (Mamut et al 2018;Zhang et al 2018), and then de novo assembly was done by Geneious R11 (Kearse et al 2012). The annotation was performed using Plann (Huang and Cronk 2015), and then verified manually.…”

mentioning

confidence: 99%

The first complete chloroplast genome sequence of a medicinal goldthread species, Coptis omeiensis (Ranunculaceae)

Yao

Lyu

Zhao

et al. 2019

Mitochondrial DNA Part B

View full text Add to dashboard Cite

show abstract

“…brevisepala W.T. Wang et Hsiao are also in decline owing to the habitat degradation and overexploitation ( Mamut et al., 2018 ). The molecular mechanisms modulating the signaling pathway of Coptis pathogenesis have been widely studied ( Yamada et al., 2016 ; He et al., 2018 ; Chen et al., 2020b ).…”

Section: Introductionmentioning

confidence: 99%

Population genetic variation and geographic distribution of suitable areas of Coptis species in China

Chi,

Liu,

Liu

et al. 2024

Front. Plant Sci.

View full text Add to dashboard Cite

IntroductionThe rhizomes of Coptis plants have been used in traditional Chinese medicine over 2000 years. Due to increasing market demand, the overexploitation of wild populations, habitat degradation and indiscriminate artificial cultivation of Coptis species have severely damaged the native germplasms of species in China.MethodsGenome-wide simple-sequence repeat (SSR) markers were developed using the genomic data of C. chinensis. Population genetic diversity and structure of 345 Coptis accessions collected from 32 different populations were performed based on these SSRs. The distribution of suitable areas for three taxa in China was predicted and the effects of environmental variables on genetic diversity in relation to different population distributions were further analyzed.Results22 primer pairs were selected as clear, stable, and polymorphic SSR markers. These had an average of 16.41 alleles and an average polymorphism information content (PIC) value of 0.664. In the neighbor-joining (N-J) clustering analysis, the 345 individuals clustered into three groups, with C. chinensis, C. chinensis var. brevisepala and C. teeta being clearly separated. All C. chinensis accessions were further divided into four subgroups in the population structure analysis. The predicted distributions of suitable areas and the environmental variables shaping these distributions varied considerably among the three species.DiscussionOverall, the amount of solar radiation, precipitation and altitude were the most important environmental variables influencing the distribution and genetic variation of three species. The findings will provide key information to guide the conservation of genetic resources and construction of a core reserve for species.

show abstract

The first complete chloroplast genome of Coptis chinensis var. brevisepala, with implication for the phylogeny of Ranunculaceae

Cited by 2 publications

References 7 publications

The first complete chloroplast genome sequence of a medicinal goldthread species, Coptis omeiensis (Ranunculaceae)

The first complete chloroplast genome sequence of a medicinal goldthread species, Coptis omeiensis (Ranunculaceae)

Population genetic variation and geographic distribution of suitable areas of Coptis species in China

Contact Info

Product

Resources

About