The fitness landscapes of translation

Abstract

Motivated by recent experiments on an antibiotic resistance gene, we investigate genetic interactions between synonymous mutations in the framework of exclusion models of translation. We show that the range of possible interactions is markedly different depending on whether translation efficiency is assumed to be proportional to ribosome current or ribosome speed. In the first case every mutational effect has a definite sign that is independent of genetic background, whereas in the second case the effect-sign can vary depending on the presence of other mutations. The latter result is demonstrated using configurations of multiple translational bottlenecks induced by slow codons.

Defect-induced anticorrelations in molecular motor traffic

“…A further frequent feature is the appearance of inhomogeneities along the track that lead to a significant slowing down of translocation at specific binding sites [19]. 1 In the ASEP approach such slow sites can be modelled by defects with a significantly reduced jump probability [25][26][27][28][29][30]. The interplay of directed translocation, steric hindrance and the presence of a defect is known to lead to 'molecular traffic jams' [2] with strong impact on protein production rates, efficiency of cargo transport or other cellular mechanisms associated with molecular motors.…”