The Forget-Me-Not dHCP study: 7 Tesla high resolution diffusion imaging in the unfixed post-mortem neonatal brain

Abstract

Diffusion MRI of the neonatal brain allows investigation of the organisational structure of maturing fibres during brain development. Post-mortem imaging has the potential to achieve high resolution by using long scan times, enabling precise assessment of small structures. The Forget-Me-Not study, part of the Developing Human Connectome Project (dHCP), aims to acquire and publicly distribute high-resolution diffusion MRI data for unfixed post-mortem neonatal brain at 7T with a custom-built head coil. This paper describes how the study addressed logistical, technical and ethical challenges relating to recruitment pipeline, care pathway, tissue preservation, scan setup and protocol optimisation. Results from the first subject recruited to the study demonstrate high-quality diffusion MRI data. Preliminary voxel-wise and tractography-based analyses are presented for the cortical plate, subplate and white matter pathways, with comparison to age-matched in vivo dHCP data. These results demonstrate that high quality post-mortem data can be acquired and provide a sensitive means to explore the developing human brain, as well as altered diffusion properties consistent with post-mortem changes, at high resolution.

The Digital Brain Bank, an open access platform for post-mortem imaging datasets

“…Several datasets are under active preparation for future release to the Digital Brain Bank , notably extending the Digital Anatomist and Digital Pathologist categories beyond human tissue for neuroanatomical and neuropathological investigations. These datasets include — Digital Anatomist : (1) Forget-Me-Not developing Human Connectome Project (dHCP) study ( Wu et al, 2021 ), providing diffusion MRI datasets acquired in unfixed, post-mortem neonatal brains; (2) BigMac dataset ( Howard et al, 2019a ) providing in vivo MRI, post-mortem MRI, PLI, and immunohistochemistry in a single, whole macaque brain. Digital Brain Zoo : further primate species are currently in preparation, as are extensions into orders Carnivora and Rodentia.…”

“…In addition, we present a previously unpublished project providing one of the highest-resolution whole-brain human diffusion MRI datasets ever acquired (500 μm isotropic resolution). The Digital Brain Bank will continue to grow over the coming years, with a number of further datasets already at the early stages of curation ( Howard et al, 2019a ; Martins-Bach et al, 2021 ; Martins-Bach et al, 2020 ; Wu et al, 2021 ).…”