The identity of multiple forms of caprine a,,-casein in variants A, B, and C has been determined by structural characterisation using mass spectrometry, automated Edman degradation and peptide mapping. Mature goat a,,-casein exists as a mixture of at least four molecular species which differ in peptide chain length. The main component corresponds to the 199-residues form already described. The other three, in lesser amounts, were shorter forms of a,,-casein and differed for the deleted peptides 141 -148, as shown previously for ovine a,,-casein, peptide 110-1 17, or Gln78. Analysis of a,,-casein mRNA from milk somatic cells demonstrated that these forms originated from skipping events at the level of exon 13 (codifying for peptide 210-117) and 16 (codifying for peptide 141-148) and from the presence of a cryptic splice site within exon 11 (whose first CAG triplet encodes Gln78) during primary transcript processing. The finding of these splicing abnormalities in the three common variants A, B, and C suggests that this is a general feature of a,,-casein in goat.A further source of heterogeneity of caprine a,,-casein was identified in the discrete phosphorylation of seryl residues. Eight serine residues (at positions 44, 46, 64 to 68 and 75) are fully phosphorylated (except in variant A because of the replacement Glu77-+Gln which prevents phosphorylation of Ser7.5). Conversely, SerllS and Ser41 are phosphorylated only to about SO% and 20%, respectively. Ser12, although located in a consensus triplet, is never phosphorylated, similarly to the ovine a,,-casein variants.These results confirm that there are stabilised mechanisms of simultaneous synthesis of a,,-casein at different length and of post-translational modification in both caprine and ovine species.Keywords: a,,-casein ; phosphorylation ; differential splicing ; non-allelic deletion ; polymorphism Previous studies performed on the goat milk protein fraction have shown an extensive qualitative polymorphism of a,,-casein, associated with quantitative variation (Boulanger et al., 1984; Grosclaude et a]., 1987). The most recent genoinic data showed the existence of at least 14 autosomal alleles at the goat a5,-casein locus, distributed in seven different classes of protein variants associated with four levels of expression, ranging between 0 (a,,-Cad) and 3.6 g/l (a,,-CasA, B and C)/allele (Martin, 1993;Martin and Leroux, 1994). a,,-casein A, B, C and E variants differ from each other by amino acid substitutions, while a,,-casein D, F and G variants, associated with a low level of protein synthesis, are internally deleted (Brignon et al., 1989(Brignon et al., , 1990. The establishment of the overall organisation of the goat a,,-casein gene (19 exons scattered along 17 kb), the characterisation of alleles F Martin and Leroux, 1994) and E (Jansa Perez et al., 1994) at the genomic level as well as a detailed analysis of their transcription products demonstrated that the deletion occurring within variant F arises from the outsplicing of three exons (9, 10, and 11)...