Supply chain finance is an effective way to solve the problem of capital turnover of construction enterprises and stabilize economic growth under epidemic situation. Blockchain technology can solve the problems in the current supply chain finance business, such as incorrect information between banks and enterprises, lack of visibility in transaction process, and possible joint fraud in the core enterprise model. However, it still has problems such as inconvenient information verification, data fraud, and difficulty to achieve a balance between efficiency, security and cost. This paper presents a hybrid chain model combining PANDA (a consensus algorithm based on public chain) and X-Alliance (a consensus algorithm based on alliance chain). Such proposed hybrid chain model can process the transaction of each account in parallel, asynchronize from other unrelated accounts in the network, provide more reliable data storage and authority management, and ensure the ownership of change tracking data, which has higher performance and lower protection cost while ensuring data security and privacy security. According to the data of network crawling, the experimental results show that the throughput can reach 1200tps when four nodes are deployed. The model serves for the supply chain financial data management of engineering projects, making trade authenticity review, risk assessment and credit transmission of core enterprises more efficient. On this basis, each participant can carry out analysis and give early warning of capital flow, timely analyze and calculate the authenticity of transaction background. The proposed method provides a reference for the normal operation of the project fund under the COVID-19 epidemic.