The genetic linkage maps of Anthurium species based on RAPD, ISSR and SRAP markers

Venkat, Sudarshini K.; Bommisetty, Padmakar; Patil, M. S.; Reddy, L. Sudarsana; Chennareddy, Aswath

doi:10.1016/j.scienta.2014.08.017

Cited by 22 publications

(12 citation statements)

References 18 publications

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“…In the case of L. angustifolius such type of molecular system was important mostly in studies on the evaluation of genetic diversity in the collection [25]. However, that type of markers was also successfully used for map construction for other species [35][36][37]. In recent years we could observe a tendency to replace marker systems such as AFLP, ISSR and RAPD developed in the early 1990s with techniques using NGS for map construction [38].…”

Section: Discussionmentioning

confidence: 99%

Preliminary Genetic Map of a New Recombinant Inbred Line Population for Narrow-leafed Lupin (Lupinus angustifolius L.)

Kozak¹,

Galek²,

Zalewski³

et al. 2019

Agronomy

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Genetic maps are an essential tool for investigating molecular markers’ linkage with traits of agronomic importance. Breeders put a lot of emphasis on this type of markers, which are used in breeding programs implementation and speed up the process of a new variety development. In this paper, we construct a new, high-density linkage genetic map for Polish material on narrow-leafed lupin. The mapping population originated from crossing the Polish variety ‘Emir’ and the Belarusian breeding line ‘LAE-1’. A new map was constructed based on DArTseq markers—a new type of marker generated with the next-generation sequencing (NGS) technique. The map was built with 4602 markers, which are divided into 20 linkage groups, corresponding with the number of gametic chromosomes in narrow-leafed lupin. On the new map there are 1174 unique loci. The total length of all linkage group is 3042 cM. This map was compared to the reference genome of narrow-leafed lupin and the CDS sequence for model legume species: emphMedicago truncatula, emphLotus japonicus and Glycine max. Analysis revealed the presence of the DArTseq marker common for all investigated species. We were able to map 38 new, unplaced scaffolds on the new genetic map of narrow-leafed lupin. The high-density genetic map we received can be used for quantitative trait locus (QTL) mapping, genome-wide association study analysis and assembly of the reference genome for the whole genome sequencing (WGS) method

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Section: Discussionmentioning

confidence: 99%

Preliminary Genetic Map of a New Recombinant Inbred Line Population for Narrow-leafed Lupin (Lupinus angustifolius L.)

Kozak¹,

Galek²,

Zalewski³

et al. 2019

Agronomy

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show abstract

“…In general, the F 2 , backcross (BC), doubled haploid (DH), or recombinant inbred lines (RIL)population are used as an appropriate mapping population to construct genetic linkage maps [5,37,38]. However, for most autopolyploid species, it is very difficult to obtain a typical family-based population in potato because of its high heterozygosity.…”

Section: Mapping Population and Strategiesmentioning

confidence: 99%

An SNP-Based High-Density Genetic Linkage Map for Tetraploid Potato Using Specific Length Amplified Fragment Sequencing (SLAF-Seq) Technology

Zhang

et al. 2020

Agronomy

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Specific length amplified fragment sequencing (SLAF-seq) is a recently developed high-resolution strategy for the discovery of large-scale de novo genotyping of single nucleotide polymorphism (SNP) markers. In the present research, in order to facilitate genome-guided breeding in potato, this strategy was used to develop a large number of SNP markers and construct a high-density genetic linkage map for tetraploid potato. The genomic DNA extracted from 106 F1 individuals derived from a cross between two tetraploid potato varieties YSP-4 × MIN-021 and their parents was used for high-throughput sequencing and SLAF library construction. A total of 556.71 Gb data, which contained 2269.98 million pair-end reads, were obtained after preprocessing. According to bioinformatics analysis, a total of 838,604 SLAF labels were developed, with an average sequencing depth of 26.14-fold for parents and 15.36-fold for offspring of each SLAF, respectively. In total, 113,473 polymorphic SLAFs were obtained, from which 7638 SLAFs were successfully classified into four segregation patterns. After filtering, a total of 7329 SNP markers were detected for genetic map construction. The final integrated linkage map of tetraploid potato included 3001 SNP markers on 12 linkage groups, and covered 1415.88 cM, with an average distance of 0.47 cM between adjacent markers. To our knowledge, the integrated map described herein has the best coverage of the potato genome and the highest marker density for tetraploid potato. This work provides a foundation for further quantitative trait loci (QTL) location, map-based gene cloning of important traits and marker-assisted selection (MAS) of potato.

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“…There are many general methods for monitoring variant seedlings in biological science, such as SSR, ISSR, RFLP, SNP, AFLP and PAPD [4][5][6], etc. For example, AFLP (Amplified Fragment Length Polymorphism) is a molecular marker technology invented by Holland scientist Vos Pieter in 1995.…”

Section: Literature Reviewmentioning

confidence: 99%

Using Fitness Value for Monitoring Kiwifruit’s Variant Seedling in Tissue Culture

Tang

Zhang

2016

Cybernetics and Information Technologies

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The genetic linkage maps of Anthurium species based on RAPD, ISSR and SRAP markers

Cited by 22 publications

References 18 publications

Preliminary Genetic Map of a New Recombinant Inbred Line Population for Narrow-leafed Lupin (Lupinus angustifolius L.)

Preliminary Genetic Map of a New Recombinant Inbred Line Population for Narrow-leafed Lupin (Lupinus angustifolius L.)

An SNP-Based High-Density Genetic Linkage Map for Tetraploid Potato Using Specific Length Amplified Fragment Sequencing (SLAF-Seq) Technology

Using Fitness Value for Monitoring Kiwifruit’s Variant Seedling in Tissue Culture

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