Spring waters with high-pCO2 content are widely distributed in the Sikhote-Alin region in Russia. Mukhen spa is one such spring located in the northern Sikhote-Alin region. This spa has two types of upwelling spring waters and exhibits distinct chemical signatures. One of the springs originates from a shallow aquifer and features hydrogen and oxygen isotopic ratios of meteoric water with a high 3He/4He ratio, whereas the other originates from a deeper aquifer and features a distinctly negative δ18O with a lower 3He/4He ratio. To understand this apparent discrepancy and the water circulation dynamics beneath Mukhen springs, we utilized all published data concerning the major solute elements and isotopic ratios of Mukhen spring waters and compared them with the He isotopic compositions on several springs in the far eastern region, which are newly analyzed in this study. The results show that the shallow aquifer comprises meteoric water that interacts with the crust enhanced by the gas component welling up from deep underground, while the fluid in deep aquifer fingerprinted the hydration reaction of silicate and involves a mantle component possibly delivered by a deep-seated fluid and/or gas upwelling along the tectonic fault through the western margin of the Sikhote-Alin region.