The molecular structures of polycyclic aromatic hydrocarbons (PAHs) from different sources (coal-derived asphaltenes (CA), petroleum-derived asphaltenes (PA) and soot (S)), that were obtained from noncontact atomic force microscopy (nc-AFM) studies published in the literature, are systematically analyzed to understand the electronic and topological structures of PAHs from different sources. The topological characterization is accomplished by obtaining the distributions of the number of fused aromatic rings (nFAR), the type and abundance of aromatic pentagonal rings, and the degree of pericondensation. Electronic characterization is carried out by obtaining the π-electron distribution in resonant sextets and localized double bonds in Clar structures using the Y-rule, and by calculating the HOMO− LUMO gap (optical transition) by means of the ZINDO/S approximation. In addition, the carbon ratio (the ratio of carbon atoms in isolated double bonds (IDB) and in aromatic sextet rings, C R = IDB/sextet carbon) is analyzed for all the structures to conclude the stability and reactivity. It is found that the PAHs from petroleum asphaltenes contain between four fused aromatic rings (4FAR) and 10FAR, with a prevalence of 6FAR−7FAR. PAHs from coal asphaltenes present structures in the range of 4FAR−11FAR, with abundant structures with 7FAR−8FAR. PAHs from soot present structures in the range of 6FAR−11FAR with a major abundance of 8FAR and 9FAR. In general, S, CA, and PA structures present one single PAH per molecule; however, a fraction of the structures in the CA and PA groups possess a single conjugated aryl-linked aromatic core, in the order CA > PA. Pentagonal rings re present in S, CA, and PA PAHs; nevertheless, these are more predominant in the soot PAHs, and the most abundant is the acenaphthylene-type pentagonal ring. For the more abundant FAR families in PAHs from S, CA, and PA, the number of Y-carbons (triple bridgehead aromatic carbons) are 7 and 8 for PAHs from soot, and PAHs from coal asphaltenes present six Y-carbons as the most abundant. These numbers are a measure of high pericondensation, which is higher in soot PAHs than in PAHs from coal asphaltenes. The PA PAHs tend to be more extended, which is reflected in low values of Y-carbons. The carbon ratios for the PAHs from S, CA, and PA show an intermediate stability and intermediate reactivity. The most abundant FAR families for PAHs in soot, coal asphaltenes, and petroleum asphaltenes present a molecular weight of 300−700 g/mol and a HOMO−LUMO gap in the range of 400−550 nm.