Pyrimidine 5 nucleotidase (P5N-1) deficiency is an autosomal recessive condition causing hemolytic anemia characterized by marked basophilic stippling and the accumulation of high concentrations of pyrimidine nucleotides within the erythrocyte. It is implicated in the anemia of lead poisoning and is possibly associated with learning difficulties. Recently, a protein with P5N-1 activity was analyzed and a provisional complementary DNA (cDNA) sequence published. This sequence was used to study 3 families with P5N-1 deficiency. This approach generated a genomic DNA sequence that was used to search GenBank and identify the gene for P5N-1. It is found on chromosome 7, consists of 10 exons with alternative splicing of exon 2, and produces proteins 286 and 297 amino acids long. Three homozygous mutations were identified in this gene in 4 subjects with P5N-1 deficiency: codon 98 GAT3GTT, Asp3Val (linked to a silent polymorphism codon 92, TAC3TAT), codon 177, CAA3TAA, Gln3termination, and IVS9-1, G3T. The latter mutation results in the loss of exon 9 (201 bp) from the cDNA. None of these mutations was found in 100 normal controls. The DNA analysis was complicated by P5N-1 pseudogenes found on chromosomes 4 and 7. This study is the first description of the structure and location of the P5N-1 gene, and 3 mutations have been identified in affected patients from separate kindreds. (
IntroductionPyrimidine 5Ј nucleotidase (P5ЈN-1, also known as uridine-5Ј-monophosphate hydrolase-1) catalyzes the dephosphorylation of the pyrimidine 5Ј monophosphates UMP and CMP to the corresponding nucleosides. A deficiency of this enzymatic activity was first identified by Valentine et al 1,2 in erythrocyte stroma while investigating patients with hemolytic anemia characterized by marked basophilic stippling. Initial studies showed very high concentrations of what were assumed to be adenine nucleotides in the erythrocytes, but these were later found to be pyrimidine nucleotides; the red blood cells (RBCs) also contained high levels of glutathione and reduced activity of ribose-phosphate pyrophosphokinase. Studies on 3 additional kindreds with hemolytic anemia and basophilic stippling demonstrated absent or markedly reduced pyrimidine 5Ј nucleotidase activity in their RBCs. 3 Reports of 40 patients with this condition have been published, with presumably large numbers undetected. However, because of the lack of a simple and reliable test for carriers, the exact prevalence of the condition is unknown. Reported numbers of homozygotes suggest that it is the third most common RBC enzymopathy-after glucose-6-phosphate dehydrogenase and pyruvate kinase deficiency-causing hemolysis. 4 Although the first 6 patients reported were all female, a number of affected males have been reported since then, and the pattern of inheritance is typical of an autosomal recessive disorder. 5 Additional studies have suggested that there are 2 isozymes of P5ЈN in RBCs, one with a preference for UMP and CMP, referred to as P5ЈN-1, and one able to hydrolyze deoxypyrimid...