The emergence of resistance mutations in the reverse transcriptase gene of hepatitis B virus (HBV) is associated with treatment failure. Entecavir (ETV) is one of the most potent antiâHBV reagents; it has a very low resistance rate and is used as the firstâline treatment for chronic hepatitis B. In this study, we isolated HBVs in 4 ETVârefractory patients (2 with viral breakthrough, 1 with partial virological response, and 1 with flareâup) and assessed ETV resistance using replicationâcompetent 1.38âfold HBV genomeâlength molecular clones. The full genome sequences of infected HBVs in ETVârefractory patients were determined. The HBV molecular clones were generated with the patientâderived sequences. After transfection of these molecular clones into HepG2 cells, viral replications and ETV susceptibilities were evaluated by measuring the amount of intracellular coreâparticleâassociated HBV DNA using Southern blotting and realâtime polymerase chain reaction. Among these cases, ETVâresistant variants were detected in 2 patients with viral breakthrough and responsible amino acid mutations in reverse transcriptase were successfully identified in these variants. No ETVâresistant mutation was detected in the other cases. The identified ETVâresistant mutations did not confer resistance to tenofovir disoproxil fumarate. Conclusion: The HBV replication model with patientâderived sequences is useful for assessing replication efficiency, susceptibility to antiâHBV reagents, and responsible resistance mutations and can aid in choosing the appropriate treatment strategy for treatmentâfailure cases of chronic hepatitis B. (Hepatology Communications 2017;1:110â121)