1In higher eukaryotes centromeres often coalesce into a large intranuclear domain called the 2 chromocenter. Chromocenters are important for the organization of pericentric heterochromatin and a 3 disturbance of their formation results in an upregulation of repetitive elements and causes defects in 4 chromosome segregation. Mutations in the gene encoding for the centromere associated Drosophila 5 speciation factor HMR show very similar phenotypes suggesting a role of HMR in chromocenter 6 architecture and function. We performed confocal and super resolution microscopy as well as 7 proximity based biotinylation experiments of HMR and its associated protein HP1a to generate a 8 molecular map of HMR and HP1a bound chromatin. Our work reveals an intricate internal structure of 9 the centromeric chromatin region, which suggests a role of HMR in separating heterochromatin from 10 centromeric chromatin.
INTRODUCTION
12In many eukaryotes pericentromeric and centromeric chromatin of multiple chromosomes cluster in 13 interphase to form a nuclear domain, the so-called chromocenter (1-3). The chromocenters are 14 composed of pericentromeric heterochromatin and CenpA containing centromeric chromatin, which 15 are both rich in repetitive DNA and evolutionarily highly dynamic (4, 5). They form and are held 16 together by multiple components ranging from RNA transcribed from the repeats (6) over DNA 17 binding factors (7), protein-protein interactions (8) to histone posttranslational modifications (9).
18Interference with chromocenter formation results in an upregulation of transposable elements, mitotic 19 defects and the formation of micronuclei (7, 8). Despite their functional importance, the centromere as 20 well as the pericentromeric repeats are highly divergent with regard to size, sequence and protein 21 composition even in very closely related species (4, 10, 11). This rapid divergence of centromeric 22 sequences is thought to be accompanied by an adaptive evolution of centromere binding proteins to 23 counteract a meiotic drive, which would otherwise result in the potentially deleterious expansion of 24 centromeric repeats (5, 12). This hypothesis is supported by the fact that many of the gene products 25 that result in hybrid incompatibility are either proteins that bind to the centromeric or pericentromeric 26 heterochromatin (13-16) or RNA molecules that localize in this region (17, 18). One of the best 27 characterised hybrid incompatibility factors is the Hybrid male rescue protein HMR (19). HMR28 interacts with the heterochromatin protein HP1a and co-localizes with the centromere-specific H3 29 variant dCenpA (CID) in Drosophila cell lines and imaginal disc cells (13). HMR binding is also 30 observed at several euchromatic sites where it colocalizes with known boundary factors (20).
31Interestingly, the intracellular localization of HMR varies among different tissues. In interphase cells of 32 larval brains it is primarily found at pericentromeric heterochromatin (15, 21, 22) whereas it also 33 associates with ...