The exact function of the pufX gene product of Rhodobacter capsulatus is uncertain, but deletion of the pufX gene renders cells incapable of phototrophic growth on a minimal medium, and photosynthetic electron transfer is impaired in vitro. However, suppressor mutants that are able to grow phototropically are readily isolated. Two such suppressor mutants were characterized as to their phototrophic growth properties, their fluorescence at different incident light intensities, the integrity of their chromatophores, and their abilities to generate a transmembrane potential. We found that the photosynthetic apparatus in the suppressor mutants was less stable than that of the pseudo-wild-type and primary mutant strains and that the suppressor mutants used light energy less efficiently than the pseudo-wild-type strain. Therefore, the suppressor strains are more precisely designated partial suppressor mutants. The locations and sequences of the suppressor mutations were determined, and both were found to change the second codon of the pufA gene. It is hypothesized that the serine residue specified by this codon is important in interactions between the B870 ␣ protein and other membrane-bound polypeptides and that suppressor mutations at this position partially compensate for loss of the PufX protein. A model is proposed for the function of the PufX protein.The purple nonsulfur bacterium Rhodobacter capsulatus is capable of both respiratory and phototrophic growth under appropriate conditions. Since the photosynthetic apparatus can be gratuitously induced during aerobic dark growth simply by lowering the oxygen concentration, R. capsulatus is a good model organism for mutational studies of the assembly and function of photosynthetic membrane-bound electron transport complexes.Energy capture during phototrophic growth is accomplished by what is herein designated the photosynthetic unit. The photosynthetic unit of R. capsulatus is composed of three types of integral membrane polypeptide complexes: the light-harvesting antennae (although several designations have been given for light-harvesting complexes in different species of purple bacteria, in this report we use B800-850 for LH2 and B870 for LH1 complexes); the reaction center, which mediates the formation of a transmembrane potential by using the energy captured by the antenna complexes; and the ubiquinol:cytochrome b-c 1 complex (b-c 1 complex), which converts the transmembrane potential to a proton gradient. A variety of experimental and theoretical data are consistent with the view that in wildtype cells of purple nonsulfur bacteria, these three types of complexes are organized in the membrane in such a way as to enhance functional interactions with each other (16,34). A structural interaction between the R. capsulatus reaction center and B870 antenna complex was indicated by the finding that a single amino acid change of the B870 ␣ polypeptide caused the loss of the B870 complex and resulted in a change in the position of the reaction center. Consequently, the reac...