During meiotic prophase, concurrent transcription, recombination, and changes in chromosome morphology, including chromosome synapsis, place substantial topological strain on chromosomal DNA. However, the roles of topoisomerases in this context remain poorly defined. Here, we show that meiotic Saccharomyces cerevisiae chromosomes accumulate topoisomerases primarily in promoter-containing intergenic regions (IGRs) of actively transcribing genes. Wide IGRs exhibit the highest level of meiotic transcription and the strongest topoisomerase buildup. Topoisomerase binding partially overlaps with double-strand break (DSB) hotspots, where the topoisomeraselike enzyme Spo11 initiates meiotic recombination. We show that TOP1 disruption delays DSB induction and shortens the window of DSB accumulation. By contrast, inactivation of TOP2 causes delayed DSB turnover. Furthermore, persistent binding of catalytically inactive Top2, as observed in top2-1 mutants, uncouples chromosome synapsis from Pch2/TRIP13-dependent chromosome remodeling. Thus, topoisomerases function at multiple points to modulate the timing of meiotic recombination.