The sedentarization of Pygmies in the Congo Basin has triggered a profound transformation in their traditional lifestyles, particularly affecting dietary habits and food consumption. We employed 24-hour dietary recalls in 10 sedentarized Baka Pygmy villages in southeastern Cameroon, gathering data on diet composition, diversity (Household Dietary Diversity Score, HDDS), and nutrient intake per adult male equivalent (AME) from 67 homes (28% of all households). Our findings revealed that 62% of consumed foods were agricultural produce, 29% were locally produced or purchased products, and the remaining 9% comprised items sourced or hunted from the wild. The average HDDS per village was low (4.1±1.56) and mean total energy intake was 1734.9±1,031.8 kcal/AME, with significant contributions from cultivated foods. There was a negative correlation between the consumption of cultivated and wild foods. Moreover, a considerable proportion of households (78.7%, ranging from 22.4% to 97%) exhibited nutrient consumption below the lower 95% uncertainty interval found in a Cameroonian nutrient supply study. Additionally, 78.3% of respondents fell below WHO/ FAO recommendations for 21 nutrients, even after adjusting for the Baka's shorter stature. This high prevalence of insufficient nutrient intake underscores the urgent need for targeted interventions to address nutritional deficiencies within this population. We show Baka households rely more on cultivated foods and are less dependent on wild sources. Understanding the profound transformation in dietary patterns and its repercussions on the health and overall well-being of the studied marginalized Indigenous communities is pivotal in devising strategies to enhance their survival. This shift in dietary profiles often stems from complex factors, including socioeconomic challenges, environmental changes, and cultural shifts. To address these issues effectively, a comprehensive approach that integrates cultural sensitivity, community engagement, and sustainable practices is imperative.