The Meat Crisis 2017
DOI: 10.4324/9781315562032-21
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The Impact of Legislation and Industry Standards on Farm Animal Welfare

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“…To sum up, the report stated that animals should have the freedom "to stand up, lie down, turn around, groom themselves and stretch their limbs". (McKenna, 2017).…”
Section: Introductionmentioning
confidence: 99%
“…To sum up, the report stated that animals should have the freedom "to stand up, lie down, turn around, groom themselves and stretch their limbs". (McKenna, 2017).…”
Section: Introductionmentioning
confidence: 99%
“…To remove reads with ambiguous alignments to repetitive regions in the genome, we arbitrarily selected a minimum mapping quality score threshold of 10, which corresponds to a 10% chance of alternative alignment, to filter our reads (Hwang et al, 2019). After that, the standard pipeline of the Samtools (Li, 2011) or GATK (McKenna, 2017) software was applied to call the variants in all the samples for the BCMO1, BCO2, and SCARB1 genes, where only SNP with SNP quality ≥30 and at least 6× as coverage depth in at least one animal (or at least 2 for B. taurus) were considered. For cattle, the effect of each SNP was evaluated through variant effect predictor (McLaren et al, 2016).…”
Section: Introductionmentioning
confidence: 99%