One of the main factors affecting protein structure in
solution
is pH. Traditionally, to study pH-dependent conformational changes
in proteins, the concentration of the H+ ions is adjusted
manually, complicating real-time analyses, hampering dynamic pH regulation,
and consequently leading to a limited number of tested pH levels.
Here, we present a programmable device, a scanning pH-meter, that
can automatically generate different types of pH ramps and waveforms
in a solution. A feedback loop algorithm calculates the required flow
rates of the acid/base titrants, allowing one, for example, to generate
periodic pH sine waveforms to study the reversibility of protein folding
by fluorescence spectroscopy. Interestingly, for some proteins, the
fluorescence intensity profiles recorded in such a periodically oscillating
pH environment display hysteretic behavior indicating an asymmetry
in the sequence of the protein unfolding/refolding events, which can
most likely be attributed to their distinct kinetics. Another useful
application of the scanning pH-meter concerns coupling it with an
electrospray ionization mass spectrometer to observe pH-induced structural
changes in proteins as revealed by their varying charge-state distributions.
We anticipate a broad range of applications of the scanning pH-meter
developed here, including protein folding studies, determination of
the optimum pH for achieving maximum fluorescence intensity, and characterization
of fluorescent dyes and other synthetic materials.