The amino acid sequence predicted from a rat liver cDNA library indicated that the precursor of b-AlaAT I (4-aminobutyrate aminotransferase, b-alanine±oxoglutarate aminotransferase) consists of a mature enzyme of 466 amino acid residues and a 34-amino acid terminal segment, with amino acids attributed to the leader peptide. However, the mass of b-AlaAT I from rat brain was larger than that from rat liver and kidney, as assessed by Western-blot analysis, mass spectroscopy and N-terminal sequencing. The mature form of b-AlaAT I from the brain had an ISQAAAK-peptide on the N-terminus of the liver mature b-AlaAT I. Brain b-AlaAT I was cleaved to liver b-AlaAT I when incubated with fresh mitochondrial extract from rat liver. These results imply that mature rat liver b-AlaAT I is proteolytically cleaved in two steps. The first cleavage of the motif XRX(5)XS is performed by a mitochondrial processing peptidase, yielding an intermediate-sized protein which is the mature brain b-AlaAT I. The second cleavage, which generates the mature liver b-AlaAT I, is also carried out by a mitochondrial endopeptidase. The second peptidase is active in liver but lacking in brain.Keywords: 4-aminobutyrate aminotransferase; GABA; mitochondrial processing peptidase; b-alanine aminotransferase; b-alanine. [4,5]. Malonate semialdehyde is converted into acetyl-CoA by methylmalonate semialdehyde dehydrogenase in the mitochondrial fraction [6,7].It is well established that 4-aminobutyrate (GABA) is a major inhibitory transmitter in many invertebrate systems and in the vertebrate central nervous system [8±10]. b-AlaAT I (GABA aminotransferase) together with succinate semialdehyde dehydrogenase and glutamate decarboxylase are the main components of the GABA shunt. b-AlaAT I in the brain is localized in the mitochondrial matrix [11] or in the inner mitochondrial membrane [12]. We proposed that the immunological and kinetic properties of b-AlaAT I from rat liver are similar to those of GABA aminotransferase from rat brain [13]. However, the N-terminal amino acid of rat liver b-AlaAT I is Val [13], while that of rat brain GABA aminotransferase has been identified as Ile by the dansyl method [14] and as Ser from the deduced amino acid sequence of the cDNA [15]. On the other hand, the N-terminal amino acid of liver and brain b-AlaAT I from pigs and humans is Ser [16,17]. This paper describes the N-terminal amino acid sequence and the molecular mass of mature b-AlaAT I in the liver and brain of rats. The N-terminal amino acid sequence of b-AlaAT I from rats is also compared with those from pigs [16] and humans [17].