The hepatitis C virus NS5A protein is tethered to cellular membranes via an amphipathic amino-terminal helix that is inserted in-plane into the outer endoplasmic reticulum (ER)-derived membrane leaflet. The charged face of the helix faces the cytoplasm and may contribute to interactions involved in replicase assembly and function. Using an aggressive charge flip mutagenesis strategy, we identified a number of essential residues for replication on the charged face of the NS5A anchor and identified a double charge face mutant that is lethal for RNA replication but generates suppressor mutations in the carboxy-terminal helix of the NS4B protein. This suppressor restores RNA replication of the NS5A helix double flip mutant (D1979K/D1982K) and, interestingly, seems to function by restoring the proper localization of NS5A to the viral replicase. These data add to our understanding of the complex organization and assembly of the viral replicase via NS4B-NS5A interactions.
IMPORTANCEInformation about the functional role of the cytosolic face of the NS5A anchoring helix remains obscure. In this study, we show that while the hydrophobic face of the NS5A anchor helix mediates membrane association, the polar cytosolic face of the helix plays a key role during hepatitis C virus (HCV) replication by mediating the interaction of NS5A with other HCV nonstructural proteins via NS4B. Such an interaction determines the subcellular localization of NS5A by engaging NS5A in the HCV replication process during the formation of a functional HCV replication complex. Thus, collectively, it can be stated that the findings in the present study provide further information about the interactions between the HCV nonstructural proteins during HCV RNA replication and provide a platform to gain more insights about the molecular architecture of HCV replication complexes.
Hepatitis C virus (HCV) is an enveloped, positive-sense, singlestranded RNA virus belonging to Hepacivirus genus within the Flaviviridae family. The HCV open reading frame (ORF) encodes a polyprotein of ϳ3,011 amino acids (aa), which is cleaved co-and posttranslationally by viral and host proteases into 10 viral proteins: the core; the envelope glycoproteins E1 and E2; the viroporin p7; and the nonstructural (NS) proteins NS2, NS3, NS4A, NS4B, NS5A, and NS5B. Among the NS proteins, NS2 with the protease activity is required for virion assembly; NS3 is a multifunctional protein with serine protease activity at the N-terminal region, while the C-terminal portion of the protein holds helicase/ nucleotide triphosphatase (NTPase) activity; NS4A acts as a cofactor for the NS3 serine protease; NS4B serves the scaffold for the HCV replication complex (RC) by inducing the formation of the membranous web (MW); NS5A is a phosphoprotein that plays a key role in HCV RNA replication and viral assembly processes; and NS5B is the RNA-dependent RNA polymerase (1-5).Like all other positive-strand RNA viruses, HCV RNA replicates in close association with cellular membranes. HCV alters the en...