Under basal conditions, the interaction of the cytosolic protein Keap1 (Kelch-like ECHassociated protein 1) with the transcription factor nuclear factor-E 2 -related factor 2 (Nrf2) results in a low level of expression of cytoprotective genes whose promoter region contains the antioxidant response element (ARE). Alkylation of one or more of the 27 cysteine sulfhydryl groups of human Keap1 is proposed to lead to Nrf2 nuclear accumulation, to upregulation of cytoprotective gene expression by the ARE, and to prevention of degenerative diseases, such as cancer. Therefore, identification of the most reactive of these cysteine residues toward specific electrophiles should help clarify this mechanism of cancer prevention, also known as chemoprevention. To address this issue, preliminary analyses of tryptic digests of Keap1 alkylated by the model electrophile 1-biotinamido-4-(4=-[maleimidoethyl-cyclohexane]-carboxamido) butane were carried out using liquid chromatographic-tandem mass spectrometry (LC-MS/MS) with a cylindrical ion trap mass spectrometer and also using LC-MS/MS with a hybrid linear ion trap FT ICR mass spectrometer. Because the FT ICR instrument provided more complete peptide sequencing coverage and enabled the identification of more alkylated cysteine residues, only this instrument was used in subsequent studies of Keap1 alkylation by three electrophilic natural products that can upregulate the ARE, xanthohumol, isoliquiritigenin, and 10-shogaol. Among the various cysteine residues of Keap1, C151 was most reactive toward these three electrophiles. These in vitro results agree with evidence from in vivo experiments, and indicate that C151 is the most important site of alkylation on Keap1 by chemoprevention agents that function by activating the ARE through Nrf2. Keap1 has five distinct domains: the N-terminal domain (amino acids 1-60); the BTB (Bric-a-brac, Tramtrack, Broad-complex) domain (amino acids 61-178); a central linker domain (amino acids 179 -321); the Kelch repeat domain (amino acids 322-608); and a C-terminal domain (amino acids 609 -625). The BTB domain mediates the dimerization of Keap1 [9] and also binds the adaptor protein in Cul3-dependent ubiquitination systems [10]. The Kelch repeat domain binds to the Nrf2 directly [1]. Because Keap1 signaling is probably mediated by alkylation of one or more of its cysteine sulfhydryl groups [3,11,12], identification of the cysteine residues that are most reactive toward specific electrophiles should help clarify this mechanism of action of Keap1.However, most of the work to date to identify reactive Keap1 cysteine residues has been carried out with model alkylating agents such as dexamethasone 21-mesylate [2], iodoacetyl-N-biotinyl hexylene diamine (BIA), and 1-biotinamido-4-(4=-[maleimidoethylcyclohexane]-carboxamido) butane (BMCC) [13] instead of biologically relevant ARE inducers that show promise as chemopreventive agents. Unlike ARE inducAddress reprint request to Professor Richard B. van Breemen,