Chloroplast and cytosolic isoforms of glutamine synthetase (GS; EC 6.3.1.2) are encoded by separate nuclear genes in plants. Here we report that the promoters for chloroplast GS2 and cytosolic GS3A of Pisum sahvum confer nonoverlapping, cell-specific expression patterns on the j8-glucuronidase (GUS) reporter gene in transgenic tobacco. The promoter for chloroplast GS2 directs GUS expression within photosynthetic cell types (e.g., palisade parenchymal cells of the leaf blade, chlorenchymal cells of the midrib and stem, and photosynthetic cells of tobacco cotyledons). The promoter for chloroplast GS2 retains the ability to confer light-regulated gene expression in the heterologous transgenic tobacco system in a manner analogous to the light-regulated expression of the cognate gene for chloroplast GS2 in pea. These expression patterns reflect the physiological role of the chloroplast GS2 isoform in the assimilation of ammonia generated by nitrite reduction and photorespiration. In contrast, the promoter for cytosolic GS3A directs expression of GUS specifically within the phloem elements in all organs of mature plants. This phloem-speciflic expression pattern suggests that the cytosolic GS3A isoenzyme functions to generate glutamine for intercellular nitrogen transport. In germinating seedlings, the intense expression of the cytosolic GS3A-GUS transgene in the vasculature of cotyledons reveals a role for cytosolic GS in the mobilization of seed storage reserves. The distinct, cell-specific patterns of expression conferred by the promoters for chloroplast GS2 and cytosolic GS3A indicate that the corresponding GS isoforms perform separate metabolic functions.In higher plants, many steps in nitrogen metabolism occur in multiple subcellular compartments. For example, many amino acid biosynthetic isoenzymes are located in the cytosol as well as in the mitochondria or chloroplasts. The relative function of many amino acid biosynthetic isoenzymes has been difficult to assess due to inadequate fractionation of organelle and cytoplasm components, overlapping activity profiles, and immunological cross-reactivity (1, 2). Consequently, it is unclear whether these isoenzymes carry out redundant or distinct roles in plant metabolism.The best-studied example of a plant amino acid biosynthetic enzyme shown to occur as multiple isoforms is glutamine synthetase (GS; EC 6.3.1.2) (3). Early biochemical data revealed that GS functions in the assimilation of ammonia generated by numerous plant processes, which include seed germination (4, 5), photorespiration (6, 7), nitrite reduction (8), nitrogen-fixation in root nodules (9, 10), and primary ammonia assimilation from the soil (11). An analysis of the GS genes in several species has revealed a strong correlation of individual GS gene expression with specific aspects of plant development (12)(13)(14)(15)(16)(17)(18). Recent sequence analysis of GS cDNAs from Pisum sativum and Phaseolus vulgaris has shown that chloroplast and cytosolic GS are encoded by separate but similar nuclea...