Waglerin-1 (Wtx-1) is a 22-amino acid peptide that is a competitive antagonist of the muscle nicotinic receptor (nAChR). We find that Wtx-1 binds 2100-fold more tightly to the ␣-⑀ than to the ␣-␦ binding site interface of the mouse nAChR. Moreover, Wtx-1 binds 100-fold more tightly to the ␣-⑀ interface from mouse nAChR than that from rat or human sources. Site-directed mutagenesis of residues differing in the extracellular domains of rat and mouse ⑀ subunits indicates that residues 59 and 115 mediate the species difference in Wtx-1 affinity. Mutation of residues 59 (Asp in mouse, Glu in rat ⑀) and 115 (Tyr in mouse, Ser in rat ⑀) converts Wtx-1 affinity for the ␣-⑀ interface of one species to that of the other species. Studies of different mutations at position 59 indicate both steric and electrostatic contributions to Wtx-1 affinity, whereas at position 115, both aromatic and polar groups contribute to affinity. The human nAChR also has lower affinity for Wtx-1 than mouse nAChR, but unlike rat nAChR, residues in both ␣ and ⑀ subunits mediate the affinity difference. In human nAChR, polar residues (Ser-187 and Thr-189) confer low affinity, whereas in mouse nAChR aromatic residues (Trp-187 and Phe-189) confer high affinity. The overall results show that non-conserved residues at the nAChR binding site, although not crucial for activation by ACh, govern the potency of neuromuscular toxins.The muscle nicotinic receptor (1-3) contains five polypeptide subunits arranged with radial symmetry around a central pore. Two copies of ␣ and one each of , ␦, and ␥ (in the embryonic receptor form) or ⑀ (in the adult form) (4) are arranged around the central pore in the counterclockwise order: ␣-␥/⑀-␣-␦- as established from the crystal structure determination of the acetylcholine binding protein from the freshwater snail Lymnaea stagnalis (5, 6). Each of the five subunits contains between 445 and 497 amino acids with residues 1 through ϳ210 forming the extracellular ligand binding domain. Each receptor subunit has up to three N-linked glycosylation sites and four transmembrane spans, giving the pentamer a molecular mass of nearly 300 kDa with 20 membrane spans. The binding sites for agonists and competitive antagonists are found at interfaces of the ␣-␦ and ␣-⑀ (or ␣-␥) subunits of the receptor. Full activation of the nAChR 1 requires simultaneous binding of two agonist molecules, but antagonists block activation by occupying only one of the two sites.Snakes of the Elapidae and Hydrophidae families are notorious for producing toxins that target nicotinic receptors (7). These small proteins of 57-80 amino acids are commonly called "3-fingered" snake toxins for their characteristic three loop topology, with each of the three fingers extending from a core "knuckle" region consisting of four conserved disulfide bonds. Three-fingered toxins such as ␣-bungarotoxin have been used to probe the nAChR for over 30 years (8). On the other hand, the Viperidae family of snakes does not make 3-fingered toxins and were generally believed not...