A B S T R A C T The a-globin polypeptide is encodedby two adjacent genes, al and a2. In the normal diploid state (aa/aa) all four a-globin genes are expressed. Loss or dysfunction of one or more of these genes leads to deficient a-globin production and results in a-thalassemia. We present a technique to differentially assess the steady-state levels of the al-and a2-globin messenger RNA (mRNA) transcripts and thus delineate the relative level of expression of the two a-globin loci in a variety of a-thalassemia states. Only ail mRNA was produced in the a-thalassemia-2 haplotype (-a) (one of the two a-globin genes deleted from chromosome 16). This confirms previous gene mapping data which demonstrate deletion of the a2 gene. The triple a-globin gene haplotype (caca) is the reciprocal of the a-thalassemia-2 haplotype and thus contains an extra a2-globin gene. RNA from this haplotype contained a greater than normal level of a2-relative to alglobin mRNA. This data implies that the extra a2 gene in the triple a-globin haplotype is functional. We detected a relative instability of the a2-globin mRNA encoding the a-globin structural mutant Constant Spring. This instability may contribute to the low level of expression of the a-Constant Spring protein. In a Chinese patient with nondeletion hemoglobin-H disease (--/aaT) (both a-globin genes are present but not fully functional) a normal ratio was maintained between the levels of al-and a2-globin mRNA, implying that mRNA production from both a-globin genes is suppressed in a balanced manner. These observations extend previous findings concerning the structural rearrangements in the deletion types of athalassemia and the pathophysiology of two nondeletion variants.