DNA replication in mammalian cells is a precisely controlled physical and temporal process, likely involving cis-acting elements that control the region(s) from which replication initiates. In B cells, previous studies showed replication timing to be early throughout the immunoglobulin heavy chain (Igh) locus. The implication from replication timing studies in the B-cell line MPC11 was that early replication of the Igh locus was regulated by sequences downstream of the C␣ gene. A potential candidate for these replication control sequences was the 3 regulatory region of the Igh locus. Our results demonstrate, however, that the Igh locus maintains early replication in a B-cell line in which the 3 regulatory region has been deleted from one allele, thus indicating that replication timing of the locus is independent of this region. The faithful duplication of the mammalian genome by DNA replication occurs in a physically and temporally ordered fashion during each round of S phase. In contrast to Escherichia coli, in which bidirectional DNA replication of a circular chromosome usually initiates at a single defined origin of replication (10, 26), the significantly larger genome in higher organisms requires DNA synthesis to initiate at multiple origins. Questions regarding where replication initiates and what controls replication initiation are fundamental in understanding the ordered program of DNA replication.DNA replication in eukaryotes does not initiate from all origins simultaneously; rather, replication origins fire in a programmed manner at fixed intervals during S phase. A relationship between transcriptional activity and early timing of replication has been observed, suggestive of potential coregulation of the two processes. Housekeeping genes, accordingly, replicate relatively early in S phase in most cell types (34). Tissuespecific genes also generally replicate early in S phase in cell types in which they are expressed; however, they often replicate late when they are not transcribed. The -globin locus, for example, is early replicating in murine erythroleukemia cells (MEL) and late replicating in other cell types, such as lymphocytes (13, 18). Significantly, the same origin, located between the ␦-and -globin genes, is utilized in both erythroleukemia cells and lymphocytes (references 1 and 20 and references therein).For the mouse immunoglobulin heavy chain (Igh) locus, the temporal order of Igh gene replication has been assessed by measuring the relative concentrations of EcoRI restriction fragment segments in 5-bromouracil-labeled DNA (BU-DNA) during various intervals of S phase (4). The murine Igh locus is comprised of variable region genes, including V (variable), D (diversity), and J (joining) segments, and constant region genes. (The Igh genes are arranged on chromosome 12 as follows: telomere-V-D-J-C H -centromere. The terms "downstream" and "3Ј" are used in this article with reference to the transcriptional orientation of the Igh genes in B cells.) In non-B cells, such as MEL, the 3Ј-most constan...