The zona pellucida is an extracellular matrix consisting of three glycoproteins that surrounds mammalian eggs and mediates fertilization. The primary structures of mouse ZP1, ZP2, and ZP3 have been deduced from cDNA. Each has a predicted signal peptide and a transmembrane domain from which an ectodomain must be released. All three zona proteins undergo extensive coand post-translational modifications important for secretion and assembly of the zona matrix. In this report, native zonae pellucidae were isolated and structural features of individual zona proteins within the mixture were determined by high resolution electrospray mass spectrometry. Complete coverage of the primary structure of native ZP3, 96% of ZP2, and 56% of ZP1, the least abundant zona protein, was obtained. Partial disulfide bond assignments were made for each zona protein, and the size of the processed, native protein was determined. The N termini of ZP1 and ZP3, but not ZP2, were blocked by cyclization of glutamine to pyroglutamate. The C termini of ZP1, ZP2, and ZP3 lie upstream of a dibasic motif, which is part of, but distinct from, a proprotein convertase cleavage site. The zona proteins are highly glycosylated and 4/4 potential N-linkage sites on ZP1, 6/6 on ZP2, and 5/6 on ZP3 are occupied. Potential O-linked carbohydrate sites are more ubiquitous, but less utilized.The zona pellucida is an extracellular matrix surrounding mammalian eggs that functions in taxon-specific gamete binding, provides a post-fertilization block to polyspermy, and protects the developing pre-implantation embryo (1-3). The mouse zona pellucida (ZP) 1 is composed of three major glycoproteins (ZP1, ZP2, and ZP3) that are synthesized and secreted by oocytes during a 2-3 week growth period (4). The primary structures of ZP1 (623 amino acids), ZP2 (713 amino acids), and ZP3 (424 amino acids) have been deduced from cDNA (5-7). Each glycoprotein has a signal peptide directing it into a secretory pathway, a ϳ260 amino acid zona domain containing 8 conserved cysteine residues, and a transmembrane domain near the C terminus followed by a short cytoplasmic tail (8). The zona domain has been observed in multiple proteins (9) and has been implicated in the polymerization of extracellular matrices (10).During oocyte growth, ZP1, ZP2, and ZP3 traffick through the growing oocyte, and their ectodomains are released from a transmembrane domain at the surface of the cell (11, 12). A conserved hydrophobic patch upstream of the transmembrane domain is required for progression to the cell surface 2 and a consensus cleavage site (RX(K/R)R2) for the proprotein convertase furin is present upstream of the transmembrane domain. Although this site has been implicated in the release of the zona ectodomain (13-15), mutations (RNRR3 ANAA, or RNRR3 ANGE), do not prevent incorporation of reporter-ZP3 proteins into the zona pellucida in growing oocytes (12, 16) or transgenic mice (12) and secretion of recombinant human ZP3 with a similar mutation (RNRR3 ANAA) is not prevented (17).The three zo...