Nucleoporins (nups) compose the structure of the nuclear pore complex (NPC) of all cells, but several studies have illuminated nucleoporins' additional roles in development and the cell cycle. However, a comprehensive study of nup expression in embryonic development has not yet been reported. We synthesized antisense probes for all nup genes and used whole-mount in situ hybridization techniques to determine the expression pattern of all members of the nup family of genes at three different developmental stages in Xenopus tropicalis. We found that the expression of nups was not ubiquitous in embryos, but was localized to specific and distinguishable anatomical structures at all three stages tested. We also found that the expression patterns for nups within the same subcomplexes were not necessarily identical. Thus, nup expression is subject to a significant level of regulation during development. These results provide new information for functional studies of nups to unravel their roles in embryonic development.
KEY WORDS: nups, NPC, nuclear pore complex, in situ hybridizationThe nuclear membrane forms an essential boundary for the nucleus and is a major site of macromolecular traffic in the cell, necessitating a mechanism for selective transport (Lusk et al., 2007). The nuclear pore complex (NPC) is a cylindrical array of proteins, embedded in the nuclear envelope, which creates a portal for macromolecular transport. The structure of the NPC has been analyzed and categorized into a cytoplasmic ring, a central spoke ring, and a nuclear ring (Grossman et al., 2012). Each of these subunits is composed of proteins called nucleoporins (nups), which form different subcomplexes: transmembrane, scaffold (outer and inner ring subcomplexes), cytoplasmic (ring/ linker), nuclear basket, and channel nups. Transmembrane nups anchor the NPC to the nuclear envelope, while scaffold and central channel nups make up the central structure of the transport complex (Fig. 1A). Several cytoplasmic, channel and nuclear basket nups have phenylalanine-glycine (FG) repeats that assist in trafficking molecules. For instance, central FG-repeat nups arrayed in the central pore create the permeability barrier of the NPC (Onischenko and Weis, 2011). A new study has recently elucidated the underlying protein-protein interaction network within the NPC. Analyzing the X-rays crystallographics of scaffold nucleoporins enabled the construction of full-length atomic structures, ultimately leading to a massive composite structure of the NPC (Lin et al., 2016).