High bulk extracellular phosphatase activity (PA) suggested severe phosphorus (P) deficiency in plankton of three acidified mountain lakes in the Bohemian Forest. Bioavailability of P substantially differed among the lakes due to differences in their P loading, as well as in concentrations of aluminum (Al) and its species, and was accompanied by species-specific responses of phytoplankton. We combined the fluorescently labeled enzyme activity (FLEA) assay with image cytometry to measure cellspecific PA in natural populations of three dinophyte species, occurring in all the lakes throughout May-September 2007. The mean cell-specific PA varied among the lakes within one order of magnitude: 188-1,831 fmol AE cell )1 AE h )1 for Gymnodinium uberrimum (G. F. Allman) Kof. et Swezy, 21-150 fmol AE cell )1 AE h )1 for Gymnodinium sp., and 22-365 fmol AE cell )1 AE h )1 for Peridinium umbonatum F. Stein. To better compare cell-specific PA among the species of different size, the values were normalized per unit of cell biovolume (amol AE lm )3 AE h )1 ) for further statistical analysis. A step-forward selection identified concentrations of total and ionic Al together with pH as significant factors (P < 0.05, Monte Carlo permutation test), explaining cumulatively 57% of the total variability in cell-specific PA. However, this cell-specific PA showed an unexpected reverse trend compared to an overall gradient in P deficiency of the lake plankton. The autecological insight into dinophyte cell-specific PA therefore suggested other factors, such as light availability, mixotrophy, and ⁄ or zooplankton grazing, causing further PA variations among the acidified lakes.