The clinical isolate Enterococcus hirae S185 has a peculiar mode of resistance to penicillin in that it possesses two low-affinity penicillin-binding proteins (PBPs): the 71-kDa PBP5, also found in other enterococci, and the 77-kDa PBP3r. The two PBPs have the same low affinity for the drug and are immunochemically related to each other. The PBP3r-encoding gene has been cloned and sequenced, and the derived amino.acid sequence has been compared by computer-assisted hydrophobic cluster analysis with that of the low-affinity PBP5 ofE. hirae R40, the low-affinity PBP2' of Staphylococcus aureus, and the PBP2 of Escherichia coli used as the standard of reference of the high-Mr PBPs of class B. On the basis of the shapes, sizes, and distributions of the hydrophobic and nonhydrophobic clusters along the sequences and the linear amino acid alignments derived from this analysis, the dyad PBP3rPBP5 has an identity index of 78.5%, the triad PBP3rPBP5-PBP2' has an identity index of 291%, and the tetrad PBP3rPBP5-PBP2'-PBP2 (ofE. coli) has an identity index of 13%. In spite of this divergence, the low-affinity PBPs are of identical modular design and possess the nine amino acid groupings (boxes) typical of the N-terminal and C-terminal domains of the high-Mr PBPs of class B. At variance with the latter PBPs, however, the low-affinity PBPs have an additional =110-amino-acid polypeptide stretch that is inserted between the amino end of the N-terminal domain and the carboxy end of the membrane anchor. While the enterococcal PBP5 gene is chromosome borne, the PBP3r gene appears to be physically linked to the erin gene, which confers resistance to erythromycin and is known to be plasmid borne in almost all the Streptococcus spp. examined.The relatively low susceptibility to ,B-lactam antibiotics of enterococci compared with that of other streptococci is attributed to the presence of membrane-bound penicillinbinding proteins (PBPs) with low affinity for the drug (10,22). Presumably, these PBPs are able to take over the functions of the other PBPs when the cells are grown in the presence of 13-lactam antibiotics (10, 23). Enterococcus hirae ATCC 9790 and E. hirae S185, a clinical isolate from swine intestine, have been studied in some detail (6,7,11,23). Benzylpenicillin has a MIC for E. hirae ATCC 9790 of 1 pg ml-'. E. hirae ATCC 9790 possesses a low-affinity PBP which, on the basis of its migration on sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), is referred to as the 71-kDa PBP5. Serial cultures in the presence of increasing concentrations of benzylpenicillin have led to the isolation of a mutant, strain R40, for which the MIC is 80 tFg. ml-1 and which, in parallel to this, overproduces PBP5 (11). The MIC for E. hirae S185 is 16 ,ug. ml-'. Unexpectedly, that strain possesses two lowaffinity PBPs, the 71-kDa PBP5 and 77-kDa PBP3r. Exposure to increasing concentrations of penicillin has led to the isolation of a mutant, strain S185r, for which the MIC is considerably increased (175 ,ug. ml-') and which, in ...