2020
DOI: 10.1016/j.ympev.2019.106703
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The phylogeny of the African wood mice (Muridae, Hylomyscus) based on complete mitochondrial genomes and five nuclear genes reveals their evolutionary history and undescribed diversity

Abstract: HAL is a multidisciplinary open access archive for the deposit and dissemination of scientific research documents, whether they are published or not. The documents may come from teaching and research institutions in France or abroad, or from public or private research centers. L'archive ouverte pluridisciplinaire HAL, est destinée au dépôt et à la diffusion de documents scientifiques de niveau recherche, publiés ou non, émanant des établissements d'enseignement et de recherche français ou étrangers, des labora… Show more

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Cited by 30 publications
(25 citation statements)
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References 88 publications
(121 reference statements)
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“…Species of the largely forest‐restricted guenons (tribe Cercopithecini), a diverse clade of African primates (63 species), were inferred to have diversified mainly via allopatric speciation during the Pleistocene, but also during the Late Miocene (Guschanski et al ., 2013). Other examples of allopatric speciation linked to isolation in refugia during the Pleistocene have been reported in mammals (Johnston & Anthony, 2012; Missoup et al ., 2012; Bohoussou et al ., 2015; Gaubert et al ., 2018; Nicolas et al ., 2019, 2020) and frogs (Bell et al ., 2017). In insects, this mechanism was suggested for the East African Coastal forests of Tanzania and Kenya, where the origin of 25 species of East African flightless grasshoppers ( Parepistaurus ) was dated to the Pleistocene and attributed to allopatric speciation linked to climatic fluctuations (Hemp et al ., 2015).…”
Section: Major Speciation Models Of Tropical African Biodiversitymentioning
confidence: 99%
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“…Species of the largely forest‐restricted guenons (tribe Cercopithecini), a diverse clade of African primates (63 species), were inferred to have diversified mainly via allopatric speciation during the Pleistocene, but also during the Late Miocene (Guschanski et al ., 2013). Other examples of allopatric speciation linked to isolation in refugia during the Pleistocene have been reported in mammals (Johnston & Anthony, 2012; Missoup et al ., 2012; Bohoussou et al ., 2015; Gaubert et al ., 2018; Nicolas et al ., 2019, 2020) and frogs (Bell et al ., 2017). In insects, this mechanism was suggested for the East African Coastal forests of Tanzania and Kenya, where the origin of 25 species of East African flightless grasshoppers ( Parepistaurus ) was dated to the Pleistocene and attributed to allopatric speciation linked to climatic fluctuations (Hemp et al ., 2015).…”
Section: Major Speciation Models Of Tropical African Biodiversitymentioning
confidence: 99%
“…For example, speciation in clawed frogs started during the Late Miocene, and high diversity in central Africa was linked to persistence of forest refugia that remain today (Evans et al ., 2015). Finally, Miocene and Pliocene speciation was suggested to explain diversification of several rodent clades (Demos et al ., 2014; Bryja et al ., 2017; Nicolas et al ., 2020) and within African colobines (Ting, 2008).…”
Section: Major Speciation Models Of Tropical African Biodiversitymentioning
confidence: 99%
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“…The optimal partitioning scheme and substitution model was selected by PartitionFinder 2.1.1.2 (Lanfear et al, 2016). We followed Mackiewicz et al (2019) considering 3 codon positions for each individual protein coding gene and separate partitions for each of the RNA genes, but retained contiguous t-RNAs because individual t-RNA alignments would be too short to be informative (Nicolas et al, 2019). This reduced the number of initial partitions from 67 to 53.…”
Section: Phylogenetic Analyses and Haplotype Networkmentioning
confidence: 99%
“…The DNA sequences obtained were compared through a BLAST analysis to those available in the Genbank database. Recent molecular studies are available for the genera Hylomyscus (Nicolas et al 2012(Nicolas et al , 2020, Praomys (Nicolas et al 2012, Mikula et al 2020, Lemniscomys (Nicolas et al 2008, Denys et al 2020, Mastomys (Nicolas et al 2012) and Rattus (Lack et al 2012, Colangelo et al 2015, allowing accurate molecular species identification.…”
Section: Species Identificationmentioning
confidence: 99%