The elongation phase is a dynamic and highly regulated step of the RNA polymerase II (RNAPII) transcription cycle. A variety of transcript elongation factors (TEFs) comprising regulators of RNAPII activity, histone chaperones and modulators of histone modifications assist transcription through chromatin. Thereby TEFs substantially contribute to establish gene expression patterns during plant growth and development. Beyond that, recent research indicates that TEFs and RNAPII transcriptional elongation also play a key role in plant responses to environmental cues. Thus, certain TEFs (i.e. PAF1C, FACT, TFIIS) were found to mediate by different mechanisms transcriptional reprogramming to establish plant tolerance to abiotic conditions such as heat stress and elevated salt concentrations. At this, TEFs govern RNAPII elongation to generate the transcriptional output adequate for distinct environments. It is to be expected that future research in this developing field will reveal that the function of TEFs is involved in a growing number of plant responses to changing environmental conditions.