Dysregulation of autonomic nervous system dynamics is important in the pathophysiology of cardiovascular risk in obstructive sleep apnea (OSA). Heart rate variability (HRV) and impedance cardiography measures can estimate autonomic activity but have not gained traction clinically. We hypothesized that, even in a cohort of mild, asymptomatic OSA patients without overt cardiovascular disease, daytime HRV metrics and impedance cardiography measurements of pre-ejection period (PEP) would demonstrate increased sympathetic and decreased parasympathetic modulation compared with matched controls. Obese individuals (BMI ≥30 kg/m2) without any known cardiovascular or inflammatory comorbidities were recruited from the community. Subjects underwent standard in-laboratory polysomnograms (PSG), followed by simultaneous electrocardiography (ECG) and impedance cardiography recordings while supine, supine with paced breathing, and after standing. 74 subjects were studied, and 59% had OSA (apnea-hypopnea index (AHI) ≥10episodes/hr) with a median AHI of 25.8/hr. OSA subjects had significantly decreased daytime time- and frequency-domain HRV indices, but not significantly different PEP, when compared to controls. AHI was a significant independent predictor of time-domain HRV measures in all awake conditions, after controlling for age, gender, blood pressure, fasting cholesterol levels and hemoglobin A1C. In conclusion, our results demonstrate reductions in cardiac vagal modulation, as measured by multiple daytime time-domain markers of HRV, among asymptomatic OSA patients versus controls. Further prospective outcomes-based studies are needed to evaluate the applicability of these metrics for noninvasive screening of obese asymptomatic OSA patients, prior to the onset of overt cardiovascular disease.