With capillary electrophoresis, ionic analytes can be separated in free solution under the influence of an electric field. The capillary or microchannel format offers several advantages over classical electrophoresis, mainly the much lower time of analysis, low sample, chemical and solvent consumption, on‐column detection and quantification, and the possibility for on‐line combination with a mass spectrometer. Supporting media like porous material or gels are not needed. Thus the potential analytes cover the size range from 0.1 nm to several μm and reach from small molecules like drugs to viruses, bacteria, and eukaryotic cells. The high voltage that can be applied due to the capillary dimensions and the composition of the buffer leads, together with the high charge numbers of biomolecules like proteins or polynucleotides, to very high separation efficiencies. The large variability of the working conditions allows for separation of charged and uncharged analytes, for the latter by using hybrid methods combining electrokinetic mass transport and chromatographic separation principles.