Early colorectal carcinomas (submucosal invasive adenocarcinomas) can be classified into polypoid growth carcinoma (PG-Ca) and nonpolypoid growth carcinoma (NPG-Ca) types, the latter transforming more rapidly to advanced carcinoma. Previously, we indicated that stromal genetic instability might contribute to tumorigenesis of both sporadic and ulcerative colitis-associated colorectal adenocarcinomas. In the present study, we analyzed genetic instability of both epithelial and surrounding stromal components in PG-Ca and NPG-Ca. In 99 colorectal submucosal invasive adenocarcinomas, epithelial and stromal genetic instability was analyzed with National Cancer Institute standard microsatellite markers, chromosome 17 (Chr.17) markers and tumor suppressor gene-related markers, using a combination of the laser-captured microdissection and GeneScan approaches. Immunohistochemical analysis was carried out for hMLH1, hMSH2, MGMT and p53. In addition, we investigated methylation of the hMLH1 and MGMT promoters. The frequencies of epithelial microsatellite instability (MSI) with Chr.17 markers were significantly higher in NPG-Ca (33.3%) compared to PG-Ca (10.4%), particularly with D17S579 and D17S796. For loss of heterozygosity, only D17S786 showed a significant difference. The frequencies of stromal MSI with all markers were 31.7% and 25.9% in NPG-Ca and PG-Ca, respectively, but D17S579 and TP53 showed higher MSI in NPG-Ca than PG-Ca. Immunohistochemically, p53 protein expression in PG-Ca was significantly higher in loss of heterozygosity-positive cases with altered Chr.17 markers overall, especially the D17S796 marker, compared to cases without genetic instability. These results suggest that epithelial and stromal MSI of Chr.17 markers contributes more to carcinogenesis in NPG-Ca, whereas stromal genetic instability might be necessary for the development of both types of colorectal carcinoma. (Cancer Sci 2006; 97: 1335-1342) T wo pathways for the development of colorectal carcinoma have been proposed: the adenoma-carcinoma sequence, (1) and de novo carcinogenesis.(2) SM-Ca (invasion limited to the submucosa) have been classified histologically into two types, PG-Ca and NPG-Ca, by Shimoda et al. who suggested that the former arise from the adenoma-carcinoma sequence whereas the latter are de novo lesions that progress more easily to advanced malignancy. In colorectal carcinomas, two kinds of genetic instability are found frequently: MSI and CIN. MSI is characterized by an accumulation of somatic alterations in simple, repeated nucleotide sequences called microsatellites, (4,5) whereas CIN is characterized by LOH at sites in a number of cancer-related genes.(6,7) The precise mechanisms leading to CIN are not well understood. In sporadic colorectal carcinomas, it has been reported that approximately 15% of tumors demonstrate MSI, (8) whereas 50% exhibit LOH.Previously, we revealed not only epithelial but also stromal elements to demonstrate genetic instability in advanced colorectal carcinomas, and provided evidence that such ...