The high-C0,-requiring mutant of Synechococcus sp. PCC 7942, EK6, was obtained after extension of the C terminus of the small subunit of ribulose-I ,5-bisphosphate (RuBP) carboxylase/oxygenase (Rubisco). The carboxysomes in EK6 were much larger than in the wild type, but the cellular distribution of the large and small subunits of Rubisco was not affected. The kinetic parameters of in vitro-activated Rubisco were similar in EK6 and in the wild type. On the other hand, Rubisco appeared to be in a low state of activation in situ in EK6 cells pretreated with an air leve1 of CO,. This was deduced from the appearance of a lag phase when carboxylation was followed with time in cells permeabilized by detergent and subsequently supplied with saturating CO, and RuBP. Pretreatment of the cells with high CO, virtually abolished the lag. After low-CO, treatment, the internal RuBP pool was much higher in mutant cells than in the wild-type cells; pretreatment with high CO, reduced the pool in mutant cells. We suggest that the high-C0,-requiring phenotype in mutants that possess aberrant carboxysomes arises from the inactivated state of Rubisco when the cells are exposed to low co,.Cyanobacteria possess polyhedral bodies that contain most of the cellular Rubisco (see Codd, 1988;McKay et al., 1992) and CA activities . Quantitative models (Reinhold et al., 1989) assigned a critica1 role to the structural organization of the carboxysomes in the operation of the CCM. They postulate that CO, is generated within the carboxysomes at CA sites in close proximity to Rubisco. The CCM enable the cells to overcome the 20-fold difference between the concentration of dissolved CO, at equilibrium with air and the K, (CO,) of their Rubisco (see Aizawa and Miyachi, 1986;Badger, 1987;Pierce and Omata, 1988;Kaplan et al., 1990Kaplan et al., , 1991Kaplan et al., , 1994Miller et al., 1990;Coleman, 1991;Badger and Price, 1992, for recent reviews and literature citations).Aberrant carboxysomes were observed in severa1 Syneckococcus sp. PCC 7942 mutants, which demand high CO, for growth. These mutants were isolated after modifications of ORF78, ccmL, ccmM, ccmN, and ccmO, which were located upstream of rbc (Friedberg et al., 1989;