Calcium (Ca) and Magnesium (Mg) reabsorption along the renal tubule is dependent on distinct trans- and paracellular pathways. Our understanding of the molecular machinery involved is increasing. Ca and Mg reclamation in kidney is dependent on a diverse array of proteins, which are important for both forming divalent cation-permeable pores and channels, but also for generating the necessary driving forces for Ca and Mg transport. Alterations in these molecular constituents can have profound effects on tubular Ca and Mg handling. Diuretics are used to treat a large range of clinical conditions, but most commonly for the management of blood pressure and fluid balance. The pharmacological targets of diuretics generally directly facilitate sodium (Na) transport, but also indirectly affect renal Ca and Mg handling, i.e., by establishing a prerequisite electrochemical gradient. It is therefore not surprising that substantial alterations in divalent cation handling can be observed following diuretic treatment. The effects of diuretics on renal Ca and Mg handling are reviewed in the context of the present understanding of basal molecular mechanisms of Ca and Mg transport. Acetazolamide, osmotic diuretics, Na/H exchanger (NHE3) inhibitors, and antidiabetic Na/glucose cotransporter type 2 (SGLT) blocking compounds, target the proximal tubule, where paracellular Ca transport predominates. Loop diuretics and renal outer medullary K (ROMK) inhibitors block thick ascending limb transport, a segment with significant paracellular Ca and Mg transport. Thiazides target the distal convoluted tubule; however, their effect on divalent cation transport is not limited to that segment. Finally, potassium-sparing diuretics, which inhibit electrogenic Na transport at distal sites, can also affect divalent cation transport.