. Carotid body denervation alters ventilatory responses to ibotenic acid injections or focal acidosis in the medullary raphe. J Appl Physiol 98: 1234 -1242, 2005. First published December 3, 2004; doi:10.1152/japplphysiol.01011.2004Our aim was to determine the effects of carotid body denervation (CBD) on the ventilatory responses to focal acidosis and ibotenic acid (IA) injections into the medullary raphe area of awake, adult goats. Multiple microtubules were chronically implanted into the midline raphe area nuclei either before or after CBD. For up to 15 days after bilateral CBD, arterial PCO 2 (PaCO 2 ) (13.3 Ϯ 1.9 Torr) was increased (P Ͻ 0.001), and CO 2 sensitivity (Ϫ53.0 Ϯ 6.4%) was decreased (P Ͻ 0.001). Thereafter, resting Pa CO 2 and CO2 sensitivity returned (P Ͻ 0.01) toward control, but Pa CO 2 remained elevated (4.8 Ϯ 1.9 Torr) and CO 2 sensitivity reduced (Ϫ24.7 Ϯ 6.0%) Ն40 days after CBD. Focal acidosis (FA) at multiple medullary raphe area sites 23-44 days post-CBD with 50 or 80% CO 2 increased inspiratory flow (V I), tidal volume (VT), metabolic rate (V O2), and heart rate (HR) (P Ͻ 0.05). The effects of FA with 50% CO 2 after CBD did not differ from intact goats. However, CBD attenuated (P Ͻ 0.05) the increase in V I, VT, and HR with 80% CO2, but it had no effect on the increase in V O2. Rostral but not caudal raphe area IA injections increased V I, BP, and HR (P Ͻ 0.05), and these responses were accentuated (P Ͻ 0.001) after CBD. CO 2 sensitivity was attenuated (Ϫ20%; P Ͻ 0.05) Ͻ7 days after IA injection, but thereafter it returned to prelesion values in CBD goats. We conclude the following: 1) the attenuated response to FA after CBD provides further evidence that the carotid bodies provide a tonic facilitory input into respiratory control centers, 2) the plasticity after CBD is not due to increased raphe chemoreceptor sensitivity, and 3) the "error-sensing" function of the carotid body blunts the effect of strong stimulation of the raphe. control of breathing; CO 2 chemoreception; peripheral chemoreception ONE ROLE OF THE PERIPHERAL chemoreceptors, or carotid bodies, relates to the ability to respond to changes in arterial O 2 and CO 2 , providing error feedback to the ventilatory control system (5, 13, 23). Additionally, the carotid bodies appear to provide a tonic excitatory input into the ventilatory control system, as evidenced by the effects of carotid body denervation (CBD) studies (7,12,19). CBD leads to hypoventilation during eupnea and exercise and to a reduction in CO 2 sensitivity. However, in most species resting arterial PCO 2 (Pa CO 2 ) and CO 2 sensitivity return to pre-CBD levels within weeks after CBD, indicating that there is plasticity within this system (7).The mechanism of the plasticity in breathing after CBD is unknown, but intact aortic chemoreceptors are not required (22). Serotonin has been implicated in other forms of plasticity, but it remains to be determined whether the serotonergic or other neurons of the medullary raphe are involved in the plasticity after CBD (...