Diel changes of concentrations and assimilation rates of dissolved free amino acids (DFAA) were followed every third day during periods of 3-5 weeks in eutrophic Frederiksborg Slotsss and Lake Hylke and oligotrophic Lake Almind. Concentrations of DFAA varied from 78 to 3,672 nM, but most concentrations were between 200 and 1,600 nM. Diel variations of DFAA ranged from < lo%, but were occasionally 500%. In Fr. Slotsso, concentrations were maximal in the morning and minimal at noon. The high morning concentrations coincided with the diel minimum bacterial production. In Lake Hylke mean concentrations were measured at noon, but in Lake Almind no diel trends were obvious. Statistical analyses demonstrate that long-term changes of the DFAA pools in the lakes were negatively correlated with both primary production (except Lake Almind) and bacterial production.In Fr. Slotsso and Lake Hylke, assimilation of DFAA (based on assimilation of five abundant DFAA) did not demonstrate diel trends, but within the study periods, the mean diel assimilation rates correlated negatively with primary production. In Lake Almind, no tendencies in the DFAA assimilation rates were observed. Carbon flux of DFAA assimilation in the lakes on the average made up from 6.9 to 11.3% of the primary production, and from 28.5 to 93.1% of the bacterial production, determined with the [3H]thymidine incorporation procedure. Data from the two eutrophic lakes suggest that degradation of phytoplankton can be a major source of DFAA in lakes.