“…We previously developed Autometa, an automated binning pipeline that is able to effectively recover genomes from highly convoluted environmental and non-model host-associated microbial communities (3). This tool has seen widespread use in environments ranging from marine, freshwater and terrestrial samples, including corals (4), red algae (5), kinetoplastids (6), deep sea geothermal vents (7)(8)(9), sponges (10)(11)(12), coastal sediments (13), stromatolites (14), seaweeds (15), shipworms (16), plateau lakes (17,18), hot springs (19,20), contaminated rivers (21), beetles (22)(23)(24)(25), Kickxellomycotina fungi (26), Ensifera insects (27), fermented agave (28,29), a marsh orchid rhizobiome (30), domesticated cattle (31,32), mice (33) and human gut (34), periodontal (35) as well as urinary tract (36) microbiomes. As a consequence of Autometa's widespread use, both non-technical and technical researchers alike have communicated their frustrations regarding the ease of installation as well as the efficiency and robustness throughout the various stages of the Autometa workflow.…”