The global decline of species necessitates intensive conservation efforts, including ex‐situ breeding programs to safeguard endangered populations. However, managing welfare and reproduction in zoological gardens can present several challenges. This study aims to explore behaviors and endocrinological responses of two specimens of fossa (Cryptoprocta ferox) under human care. One hundred and twenty hours of observation through focal animal sampling continuous recording and 67 fecal samples were collected. From fecal samples, cortisol (FCM), progesterone (FPM), and testosterone (FTM) metabolites' concentrations were analyzed using Radio Immuno Assay. According to our results, higher FTM (p < 0.05) and FPM levels at the beginning of the study, showing a potential alignment with the breeding season. When the male entered the female outdoor area, he recorded longer durations of seeking and marking behaviors (p ≤ 0.01), along with lower FCM levels (p < 0.05), suggesting an enriching effect. In the same period, the female's FCM level was higher (p ≤ 0.01), indicating potential stress. When both animals were in their respective outdoor areas, the FCM level of the female remained significantly higher (p < 0.05), and the male showed a peak in pacing duration (p < 0.01), implying a potential stress or frustration status. In her indoor area, the female exhibited significantly shorter durations of locomotion, marking, and seeking (p < 0.01) and did not show any abnormal behavior, likely due to the reduced complexity of the environment. However, we cannot exclude that her complete visual and olfactory separation from the male and visitors may also have contributed to a decrease in her overall stress levels. The findings highlight the interplay between hormonal fluctuations and behavioral responses in the two zoo‐housed fossa, providing essential insights for fostering their well‐being and facilitating conservation efforts.