Type II kinase inhibitors bind in the "DFG-out" kinase conformation and are generally considered to be more potent and selective than type I inhibitors, which target a DFG-in conformation. Nine type II inhibitors are currently clinically approved, with more undergoing clinical development. Resistanceconferring secondary mutations emerged with the first series of type II inhibitors, most commonly at residues within the kinase activation loop and at the "gatekeeper" position. Recently, new inhibitors have been developed to overcome such mutations; however, mutations activating other pathways (and/or other targets) have subsequently emerged on occasion. Here, we systematically summarize the secondary mutations that confer resistance to type II inhibitors, the structural basis for resistance, newer inhibitors designed to overcome resistance, as well as the challenges and opportunities for the development of new inhibitors to overcome secondary kinase domain mutations.
■ SIGNIFICANCEType II kinase inhibitors comprise a significant subset of clinically approved small molecule kinase inhibitors; however, the activity of many type II inhibitors is compromised due to secondary mutations. This study reviews secondary mutations that have emerged for type II inhibitors, current methods to overcome them, and provides perspectives on possible future strategies for overcoming secondary mutations.