Hashimoto's disease, the most common cause of hypothyroidism in iodine-sufficient regions, is traditionally viewed as a thyroid-specific autoimmune disorder. However, emerging evidence indicates that Hashimoto's disease has far-reaching systemic effects, manifesting in multiple organ systems beyond the thyroid gland. This comprehensive review aims to elucidate the extra-thyroidal manifestations of Hashimoto's disease, highlighting their pathophysiology, clinical presentation, and management strategies. The review explores neurological, cardiovascular, dermatological, gastrointestinal, musculoskeletal, and hematological manifestations, which can significantly impact the quality of life and complicate the clinical course of the disease. Neurological symptoms such as cognitive impairment, depression, and peripheral neuropathy, as well as cardiovascular complications like dyslipidemia and atherosclerosis, are increasingly recognized as significant concerns in patients with Hashimoto's disease. Additionally, autoimmune skin disorders, gastrointestinal motility issues, and musculoskeletal pain are discussed in the context of their connection to thyroid dysfunction. The review emphasizes the importance of recognizing these systemic manifestations for comprehensive patient management and suggests that a holistic approach, rather than focusing solely on thyroid hormone replacement, is essential. This review aims to improve diagnostic accuracy, treatment outcomes, and overall patient care by broadening the understanding of Hashimoto's disease to include its extra-thyroidal effects. Further research is encouraged to explore novel therapeutic approaches targeting the autoimmune mechanisms underlying these systemic manifestations.