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The gene encoding aspartate aminotransferase from the psychrophilic bacterium Pseudoalteromonas haloplanktis TAC 125 was cloned, sequenced and overexpressed in Escherichia coli. The recombinant protein (PhAspAT) was characterized both at the structural and functional level in comparison with the E. coli enzyme (EcAspAT), which is the most closely related (52% sequence identity) bacterial counterpart. PhAspAT is rapidly inactivated at 50 8C (half-life 6.8 min), whereas at this temperature EcAspAT is stable for at least 3 h. The optimal temperature for PhAspAT activity is < 64 8C, which is some 11 8C below that of EcAspAT. The protein thermal stability was investigated by following changes in both tryptophan fluorescence and amide ellipticity; this clearly suggested that a first structural transition occurs at < 50 8C for PhAspAT. These results agree with the expected thermolability of a psychrophilic enzyme, although the observed stability is much higher than generally found for enzymes isolated from cold-loving organisms. Furthermore, in contrast with the higher efficiency exhibited by several extracellular psychrophilic enzymes, both k cat and k cat /K m of PhAspAT are significantly lower than those of EcAspAT over the whole temperature range. This behaviour possibly suggests that the adaptation of this class of endocellular enzymes to a cold environment may have only made them less stable and not more efficient.The affinity of PhAspAT for both amino-acid and 2-oxo-acid substrates decreases with increasing temperature. However, binding of maleate and 2-methyl-l-aspartate, which both inhibit the initial steps of catalysis, does not change over the temperature range tested. Therefore, the observed temperature effect may occur at any of the steps of the catalytic mechanism after the formation of the external aldimine.A molecular model of PhAspAT was constructed on the basis of sequence homology with other AspATs. Interestingly, it shows no insertion or extension of loops, but some cavities and a decrease in side chain packing can be observed.Keywords: aspartate aminotransferase; cold adaptation; psychrophile.The conformational stability of most globular proteins is surprisingly low, usually not exceeding 60 kJ´mol 21 [1,2], which corresponds to a few non-covalent interactions (hydrogen bonds, salt bridges and hydrophobic interactions) out of hundreds that contribute to the formation of a well-defined 3D protein structure. The biological significance of this observation may depend on the functional role of proteins: a compromise between rigidity and flexibility of the polypeptide chain is absolutely required to allow the protein to function. This compromise reflects the basic need for biological molecules to adapt to`extreme' growth conditions, as evolution seems to have forced structural changes towards optimization of structure/function relationships rather than maximum stability [2].Only recently has increased effort been devoted to understanding the molecular basis of protein adaptation to cold (reviewed in [3±...
The gene encoding aspartate aminotransferase from the psychrophilic bacterium Pseudoalteromonas haloplanktis TAC 125 was cloned, sequenced and overexpressed in Escherichia coli. The recombinant protein (PhAspAT) was characterized both at the structural and functional level in comparison with the E. coli enzyme (EcAspAT), which is the most closely related (52% sequence identity) bacterial counterpart. PhAspAT is rapidly inactivated at 50 8C (half-life 6.8 min), whereas at this temperature EcAspAT is stable for at least 3 h. The optimal temperature for PhAspAT activity is < 64 8C, which is some 11 8C below that of EcAspAT. The protein thermal stability was investigated by following changes in both tryptophan fluorescence and amide ellipticity; this clearly suggested that a first structural transition occurs at < 50 8C for PhAspAT. These results agree with the expected thermolability of a psychrophilic enzyme, although the observed stability is much higher than generally found for enzymes isolated from cold-loving organisms. Furthermore, in contrast with the higher efficiency exhibited by several extracellular psychrophilic enzymes, both k cat and k cat /K m of PhAspAT are significantly lower than those of EcAspAT over the whole temperature range. This behaviour possibly suggests that the adaptation of this class of endocellular enzymes to a cold environment may have only made them less stable and not more efficient.The affinity of PhAspAT for both amino-acid and 2-oxo-acid substrates decreases with increasing temperature. However, binding of maleate and 2-methyl-l-aspartate, which both inhibit the initial steps of catalysis, does not change over the temperature range tested. Therefore, the observed temperature effect may occur at any of the steps of the catalytic mechanism after the formation of the external aldimine.A molecular model of PhAspAT was constructed on the basis of sequence homology with other AspATs. Interestingly, it shows no insertion or extension of loops, but some cavities and a decrease in side chain packing can be observed.Keywords: aspartate aminotransferase; cold adaptation; psychrophile.The conformational stability of most globular proteins is surprisingly low, usually not exceeding 60 kJ´mol 21 [1,2], which corresponds to a few non-covalent interactions (hydrogen bonds, salt bridges and hydrophobic interactions) out of hundreds that contribute to the formation of a well-defined 3D protein structure. The biological significance of this observation may depend on the functional role of proteins: a compromise between rigidity and flexibility of the polypeptide chain is absolutely required to allow the protein to function. This compromise reflects the basic need for biological molecules to adapt to`extreme' growth conditions, as evolution seems to have forced structural changes towards optimization of structure/function relationships rather than maximum stability [2].Only recently has increased effort been devoted to understanding the molecular basis of protein adaptation to cold (reviewed in [3±...
Serine racemase is a brain-enriched enzyme that synthesizes Dserine, an endogenous modulator of the glycine site of N-methyl-D-aspartate (NMDA) receptors. We now report that serine racemase catalyzes an elimination reaction toward a nonphysiological substrate that provides a powerful tool to study its neurobiological role and will be useful to develop selective enzyme inhibitors. Serine racemase catalyzes robust elimination of L-serine O-sulfate that is 500 times faster than the physiological racemization reaction, generating sulfate, ammonia, and pyruvate. This reaction provides the most simple and sensitive assay to detect the enzyme activity so far. We establish stable cell lines expressing serine racemase and show that serine racemase can also be converted Immunohistochemical studies show a high degree of colocalization of D-serine and NMDA receptors in the forebrain, whereas densities for glycine are more prominent in the brainstem (5, 6). D-serine occurs in protoplasmic astrocytes that ensheathe the synapses and can be released from astrocyte cultures by activation of the kainate type of glutamate receptors (5). Direct evidence that D-serine normally mediates NMDA transmission comes from experiments showing that destruction of endogenous D-serine selectively by application of D-amino acid oxidase greatly reduces NMDA receptor activity monitored both biochemically and electrophysiologically in slices and cell culture preparations (7).Because amino acid racemases were thought to be restricted to bacteria, the origin of D-serine has been puzzling. We recently showed that D-serine is synthesized from L-serine by a pyridoxal 5Ј-phosphate-dependent serine racemase. We purified serine racemase from murine brain (8) and cloned mouse and human serine racemase genes (9, 10). The distribution of serine racemase was closely similar to that of endogenous D-serine with the highest concentrations in the forebrain and negligible levels in the brainstem. Both D-serine and serine racemase occur in astrocytes, in regions enriched in NMDA receptors, suggesting that serine racemase physiologically synthesizes D-serine to regulate NMDA receptor activity (9).As an endogenous coagonist of NMDA receptors, D-serine may play a role in several pathological conditions related to NMDA receptor dysfunction. Elevations of extracellular concentrations of D-serine are observed after transient cerebral ischemia in rats (11), and drugs that block the ''glycine site'' of NMDA receptors prevent stroke damage (12, 13). D-serine is at least as potent as glycine in stimulating glutamate-induced activation of NMDA receptors (3,14), and massive stimulation of NMDA receptors is implicated in neural damage following stroke (15). Thus, inhibitors of serine racemase may be useful in conditions such as stroke and neurodegenerative diseases where overstimulation of NMDA receptors plays a pathological role.In addition to being a therapeutic target, the study of serine racemase biochemical properties and regulation are important to elucidate the neurobiolo...
This study presents the crystal structure of a thiol variant of the human mitochondrial branched-chain aminotransferase protein. Human branchedchain aminotransferase (hBCAT) catalyzes the transamination of the branchedchain amino acids leucine, valine and isoleucine and -ketoglutarate to their respective -keto acids and glutamate. hBCAT activity is regulated by a CXXC center located approximately 10 Å from the active site. This redox-active center facilitates recycling between the reduced and oxidized states, representing hBCAT in its active and inactive forms, respectively. Site-directed mutagenesis of the redox sensor (Cys315) results in a significant loss of activity, with no loss of activity reported on the mutation of the resolving cysteine (Cys318), which allows the reversible formation of a disulfide bond between Cys315 and Cys318. The crystal structure of the oxidized form of the C318A variant was used to better understand the contributions of the individual cysteines and their oxidation states. The structure reveals the modified CXXC center in a conformation similar to that in the oxidized wild type, supporting the notion that its regulatory mechanism depends on switching the Cys315 side chain between active and inactive conformations. Moreover, the structure reveals conformational differences in the N-terminal and inter-domain region that may correlate with the inactivated state of the CXXC center.
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