Ciliates are among the very few eukaryotes in which the powers of molecular biology, conventional genetics, and microbial methodology can be synergistically combined. Because ciliates also are distant relatives of vertebrates, fungi, and plants, the sequencing of a ciliate genome will be of import to our understanding of eukaryotic biology. Tetrahymena thermophila is the only ciliate in which a systematic genetic mapping of DNA polymorphisms has begun. Tetrahymena has many biological features that make it a specially or uniquely useful experimental system for fundamental research in cell and molecular biology and for biotechnological applications. A key factor in the usefulness of Tetrahymena is the speed, facility, and versatility with which it can be cultivated under a wide range of nutrient conditions, temperature, and scale. This article describes the progress made in genetically and physically mapping the genomes of T. thermophila: the micronuclear (germ-line) genome, which is not transcriptionally expressed, and the macronuclear (somatic) fragmented genome, which is actively expressed and determines the cell's phenotype.
Introduction to the Ciliated ProtozoaTetrahymena is a member of the Ciliated Protozoa, a monophyletic group of unicellular eukaryotes, whose biology was reviewed recently in Hausmann and Bradbury (1996). The ciliates diverged earlier than plants and fungi in the evolutionary line leading to the vertebrates (see Pace 1997). Yet the ciliates possess a typical eukaryote life cycle, with conventional meiosis and biparental fertilization through the union of haploid gametes. While retaining unicellularity, ciliates exhibit evolutionary advances reminiscent of features of multicellular eukaryotes. For example, ciliates possess vegetative growth restricted to the diploid phase of their life cycle; extensive compounding of cellular structure that has led to the evolution of macroscopically observable unicells; elaborate structural differentiations accompanied by complex morphogenetic mechanisms; internal fertilization through direct exchange of gamete nuclei; and nuclear dimorphism, that is, the possession of differentiated germ-line and somatic nuclei, described below.The possession of two related but functionally differentiated genomes within one cell is a diagnostic ciliate feature. The germ-line genome is carried in the diploid micronucleus (MIC), whereas the somatic genome is contained in the polyploid macronucleus (MAC). MIC and MAC differentiate from mitotic descendants of the fertilization nucleus formed during conjugation, the sexual stage of the life cycle (Fig. 1). MAC differentiation is accompanied by chromosome fragmentation and thousands of other DNA rearrangements (Prescott 1994;Coyne et al. 1996). These rearrangements, which are developmentally programmed and site-specific, reconfigure the genome extensively. Nuclear differentiation results in a MIC that is not transcriptionally expressed and an actively expressed MAC that determines the cell's phenotype. The nuclear dualism of the...