Autophagy is a lysosomal pathway for cellular homeostasis control. Both non-selective bulk autophagy and selective autophagy of specific proteins or organelles have been found. Selective autophagy prevents cells from pathogen invasion and stress damage, but its role in regulating transcriptional factors is not clear. Using a macrophage cell differentiation model, the role of autophagy in nuclear factor-jB (NF-jB) regulation is investigated. The bone marrow-derived macrophages (BMDMs) will differentiate into a M2-like phenotype in the presence of hepatoma tumor cell condition medium (CM). The TLR2 signaling drives this M2 polarization and causes NF-jB p65 degradation via lysosome-dependent pathway. The CM-induced ubiquitinated-NF-jB p65 forms aggresome-like structures (ALS) in the cytoplasm of cultured and hepatoma-associated M2 macrophages. This NF-jB p65-contained ALS is recognized by p62/SQSTM1 and degraded by selective autophagy. Treatment with the lysosomal inhibitor bafilomycin A1 or the knockdown of Atg5 can prevent CM-induced NK-jB p65 degradation and induce M2 macrophages to produce a high level of pro-inflammatory cytokines. Furthermore, TLR2 signal induces sustained phosphorylation of extracellular signal-regulated kinase 1/2 to facilitate this autophagy-dependent NF-jB regulation. Our finding provides a novel pathway of NF-jB regulation by p62/SQSTM1-mediated selective autophagy. Autophagy is an evolutionarily conserved lysosome-dependent system in eukaryotes to regulate the turnover of cellular proteins and organelles. This self-eating system has been shown to control various cellular functions, including immune activation and cancer generation. 1,2 During autophagy, target proteins or organelles are delivered into double-membrane autophagosomes for lysosomal degradation. Although different kinds of cargos are found in autophagosomes, emerging studies have indicated that specialized target protein aggregates will selectively be recognized by autophagy, particularly ubiquitylated protein aggregates or pathogens. 3,4 The ubiquitin-binding proteins, such as p62/SQSTM1 (sequestosome 1), histone deacetylase 6 (HDAC6), neighbor of BRCA1 gene 1 (NBR1), nuclear dot protein 52 kDa (NDP52) and optineurin are responsible for this selective autophagy degradation. [5][6][7][8][9] The transcriptional factor nuclear factor-kB (NF-kB) plays a central role in the regulation of inflammatory responses and macrophage differentiation. Both classical M1 and alternative M2 macrophage differentiation require NF-kB activation. 10 Most tumor infiltrating macrophages are characterized by an anti-inflammatory M2 phenotype with a high production of IL-10, but low IL-12. Although NF-kB activation is essential for M2 macrophage induction, isolated tumor-associated macrophages (TAM) from various tumors represent less NF-kB activity. 10,11 It is still not clear how these NF-kBs are downregulated. NF-kB can be activated by toll-like receptor (TLR) signaling in myeloid cells to induce degradation of the NF-kB inhibitor, IkBa, and caus...