CD1d molecules recognize glycolipid antigens with straight chain fatty acid moieties. Although most of the residues in the CD1d binding groove are hydrophobic, some of the amino acids can form hydrogen bonds. Consequently, we have designed ω-hydroxy fatty acid-containing glycolipid derivatives of the prototypical CD1d ligand α-GalCer. The potency of the ω-hydroxy analogues of the proper length is comparable to that of α-GalCer. We propose, based on the biological results and molecular modeling studies, that a hydrogen bonding interaction is involved between the ω-hydroxy group and a polar amino acid residue in the hydrophobic binding groove.KEYWORDS: α-Galactosylceramide, CD1d, hydrogen bonding interaction, NKT cell activator, drug design α-GalCer (also known as KRN7000, 1, Figure 1) is a synthetic glycolipid composed of α-linked galactose, phytosphingosine, and hexacosanoic acid. This glycolipid is the first agonist discovered for natural killer T (NKT) cells 1,2 and has helped elucidate NKT cell biology.3−5 In addition, its structure has served as a basic guide for the design and synthesis of various analogues.6−8 α-GalCer activates NKT cells in a CD1d-restricted manner. First, α-GalCer binds to the CD1d molecule of antigenpresenting cells to form a glycolipid/CD1d binary complex. 2,9 This complex is recognized by the T cell receptor (TCR) on the NKT cells, forming a ternary complex that eventually activates the NKT cells. 10,11 The activated NKT cells promptly secrete T helper 1 and 2 (Th1 and Th2) cytokines, such as interferon-γ (IFN-γ) and interleukin 4 (IL-4); these cytokines help induce a series of cellular activation events during immune response. 12,13 In this process, α-GalCer induces the secretion of Th1 and Th2 cytokines indiscriminantly.
14−16The binding mode of α-GalCer within CD1d was clearly defined during X-ray crystallographic studies.10,17−20 The phytosphingosine chain of α-GalCer fit into the F′ pocket of the binding groove, and the fatty acid chain filled the A′ pocket.In this binding complex, the fatty acid chain circles around the central pole formed by residues Phe70 and Cys12 in the A′ pocket (Figure 2a). Various types of interactions hold α-GalCer in the correct position for recognition by the TCR. While hydrogen-bonding is the predominant interaction between the polar portion of α-GalCer and the surface residues of CD1d, 10 hydrophobic interactions are the principal factors generating the binding energy between the two lipid chains and the CD1d binding groove.
17Most of the residues in the CD1d deep binding groove are hydrophobic amino acids. Interestingly, the binding groove also contains a few amino acids able to form hydrogen bonds, such as Cys12, Gln14, Ser28, Thr37, His38, and Arg74. 21 It was envisioned that these amino acids might be utilized to construct additional interactions and stabilize the glycolipid/CD1d binary complex.22 Therefore, we introduced a heteroatom into the α-GalCer fatty acid chain with the hope of providing a new rational basis for the design of C...