Bacterial division is mediated by a protein complex called the Z‐ring, and ZapE is a Z‐ring‐associated protein that acts as its negative regulator. Here, we showed that treatment of Escherichia coli with the antibiotic aztreonam stabilized the Z‐ring, induced filamentation, and reduced viability––similar phenotypes are observed in ZapE deletion strains. Aztreonam treatment decreased ZapE expression, and the overexpression of ZapE rescued the filamentous morphology significantly and the viability partially. However, overexpression of FtsI, a known target of aztreonam, could not rescue the filamentation. Interestingly, overexpression of ZapE and FtsI together was able to rescue both the filamentous morphology and the cell viability. Using in silico and biochemical analyses we showed that aztreonam directly interacts with ZapE. Our study suggests that the inhibitory effects of aztreonam in E.coli could be mediated by targeting ZapE.