Rationale: Pulmonary hypertension is a common complication of chronic hypoxic lung diseases and is associated with increased morbidity and reduced survival. The pulmonary vascular changes in response to hypoxia, both structural and functional, are unique to this circulation. Objectives: To identify transcription factor pathways uniquely activated in the lung in response to hypoxia. Methods: After exposure to environmental hypoxia (10% O 2 ) for varying periods (3 h to 2 wk), lungs and systemic organs were isolated from groups of adult male mice. Bioinformatic examination of genes the expression of which changed in the hypoxic lung (assessed using microarray analysis) identified potential lung-selective transcription factors controlling these changes in gene expression. In separate further experiments, lung-selective activation of these candidate transcription factors was tested in hypoxic mice and by comparing hypoxic responses of primary human pulmonary and cardiac microvascular endothelial cells in vitro. Measurements and Main Results: Bioinformatic analysis identified cAMP response element binding (CREB) family members as candidate lung-selective hypoxia-responsive transcription factors. Further in vivo experiments demonstrated activation of CREB and activating transcription factor (ATF)1 and up-regulation of CREB family-responsive genes in the hypoxic lung, but not in other organs. Hypoxia-dependent CREB activation and CREB-responsive gene expression was observed in human primary lung, but not cardiac microvascular endothelial cells. Conclusions: These findings suggest that activation of CREB and AFT1 plays a key role in the lung-specific responses to hypoxia, and that lung microvascular endothelial cells are important, proximal effector cells in the specific responses of the pulmonary circulation to hypoxia.Keywords: hypoxia; cAMP response element binding; pulmonary hypertension; transcription factor binding site Pulmonary hypertension is a common complication of chronic hypoxic lung diseases, which is associated with increased morbidity and reduced survival. Moreover, cor pulmonale is an independent predictor of increased mortality, suggesting that pulmonary hypertension contributes directly to reduced survival (1, 2). The increased pulmonary vascular resistance underlying chronic hypoxic pulmonary hypertension is accompanied by characteristic changes in the blood vessels, which include remodeling and thickening of the walls of precapillary vessels and sustained vasoconstriction (3-8). These long-term structural and functional changes in the pulmonary vessels in response to hypoxia are unique to this circulation, and are not observed in the vasculature of other organs of the body.The important roles of the vascular endothelium in the local control of vascular smooth muscle tone and in modulating changes in the structure of the vessel wall are now well recognized (9). It is also well recognized that endothelial cells from different organs show considerable heterogeneity, and that their roles in the control ...